Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   H1R75_RS02950 Genome accession   NZ_CP059471
Coordinates   538831..539916 (+) Length   361 a.a.
NCBI ID   WP_033152147.1    Uniprot ID   -
Organism   Streptococcus equinus strain MDC1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 533831..544916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R75_RS02925 (H1R75_02925) asnA 534837..535829 (+) 993 WP_021141821.1 aspartate--ammonia ligase -
  H1R75_RS02930 (H1R75_02930) - 535939..536658 (-) 720 WP_182001620.1 hypothetical protein -
  H1R75_RS02935 (H1R75_02935) - 536807..537652 (-) 846 WP_182001621.1 hypothetical protein -
  H1R75_RS02940 (H1R75_02940) rsmD 537785..538324 (+) 540 WP_033153640.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H1R75_RS02945 (H1R75_02945) coaD 538356..538853 (+) 498 WP_074533826.1 pantetheine-phosphate adenylyltransferase -
  H1R75_RS02950 (H1R75_02950) sepM 538831..539916 (+) 1086 WP_033152147.1 SepM family pheromone-processing serine protease Regulator
  H1R75_RS02955 (H1R75_02955) - 540034..540279 (+) 246 WP_045798163.1 DUF3923 family protein -
  H1R75_RS02960 (H1R75_02960) - 540365..541696 (+) 1332 WP_182001622.1 bifunctional metallophosphatase/5'-nucleotidase -
  H1R75_RS02965 (H1R75_02965) - 541726..542286 (+) 561 WP_033152154.1 YutD family protein -
  H1R75_RS02970 (H1R75_02970) rlmN 542307..543407 (+) 1101 WP_021141827.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  H1R75_RS02975 (H1R75_02975) - 543418..543927 (+) 510 WP_074450964.1 VanZ family protein -

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 38892.70 Da        Isoelectric Point: 4.4949

>NTDB_id=469817 H1R75_RS02950 WP_033152147.1 538831..539916(+) (sepM) [Streptococcus equinus strain MDC1]
MTILNAFKGILKKIGRILYRLKWWILGIVGTAFIIFSLFCPLGYYVEMPGGAYDVRSVLTVNNKADKEDGSYNFVAVGVS
QATLAQLVYAWLTPHTEITTEAATTGGYSNADYMRINQYYMETSQNTATYQALTLAGKNVSLDYEGVYVLNVDKHSTFKG
LLHLADTVTGVNGKTFNSSAELMAYVADLDLGSDVTVQETSNGKSKEVSGKIIELPNGKNGIGIGLVDHTEVSSDVDVDF
ETSGFGGPSAGLMFTLDIYDQVNNEDLRKGRKIAGTGTINSDGSVGDIGGAGLKVVSAAKAGADVFFVPNNPVDEETKKE
NPDAKTNYQEAKEAAKDLDTDMKIVPVTTVQEAIDYLRSTD

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=469817 H1R75_RS02950 WP_033152147.1 538831..539916(+) (sepM) [Streptococcus equinus strain MDC1]
ATGACAATCTTAAACGCATTTAAAGGGATTTTGAAAAAGATAGGTCGTATTTTGTATCGCTTAAAATGGTGGATTTTAGG
TATTGTTGGCACTGCTTTTATTATTTTCAGCCTTTTTTGCCCACTTGGTTATTATGTTGAAATGCCTGGCGGTGCTTACG
ATGTTCGCAGTGTTTTAACGGTTAATAATAAAGCTGATAAAGAAGATGGCTCTTATAATTTTGTAGCTGTTGGGGTTAGT
CAAGCAACGCTTGCTCAGTTGGTTTATGCTTGGTTGACGCCGCACACTGAAATTACAACTGAAGCAGCAACGACTGGTGG
TTACAGCAACGCAGACTATATGCGCATTAACCAATATTATATGGAAACTTCTCAAAATACAGCGACCTATCAAGCACTGA
CTTTGGCAGGAAAGAATGTTAGTTTGGATTATGAAGGTGTGTATGTTTTGAATGTTGATAAGCATTCGACCTTCAAAGGT
CTGTTGCACCTTGCTGATACTGTGACAGGTGTTAACGGTAAAACTTTCAATAGTTCTGCAGAATTAATGGCTTATGTTGC
TGATTTAGATTTGGGTTCTGATGTGACTGTCCAAGAGACTTCTAACGGTAAGAGTAAAGAAGTTTCTGGAAAAATCATTG
AATTGCCAAATGGTAAAAATGGAATTGGTATCGGATTAGTCGACCATACAGAAGTTTCATCAGATGTTGATGTTGATTTT
GAAACGAGCGGTTTTGGCGGACCAAGTGCTGGTTTGATGTTCACTCTAGATATTTACGACCAAGTCAATAATGAAGATTT
GAGAAAAGGTCGTAAGATTGCTGGTACTGGTACGATTAATTCGGATGGTTCAGTTGGTGATATTGGCGGTGCTGGGTTAA
AAGTAGTGTCAGCTGCTAAGGCTGGTGCGGATGTTTTCTTTGTACCTAATAACCCTGTTGATGAAGAAACGAAAAAAGAA
AATCCAGATGCTAAGACTAACTATCAAGAAGCAAAAGAAGCTGCAAAAGATTTAGATACTGATATGAAGATTGTTCCTGT
GACAACTGTTCAGGAAGCAATTGATTATTTGCGTAGCACAGATTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

66.667

93.906

0.626