Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HBJ46_RS12050 Genome accession   NZ_CP059468
Coordinates   2556181..2556777 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain BA25665     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2551181..2561777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBJ46_RS12030 (HBJ46_012015) - 2551373..2553130 (-) 1758 WP_004179203.1 Lon protease family protein -
  HBJ46_RS12035 (HBJ46_012020) matP 2553316..2553768 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HBJ46_RS12040 (HBJ46_012025) ompA 2553900..2554970 (-) 1071 WP_002898408.1 porin OmpA -
  HBJ46_RS12045 (HBJ46_012030) sulA 2555323..2555832 (-) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  HBJ46_RS12050 (HBJ46_012035) sxy/tfoX 2556181..2556777 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  HBJ46_RS12055 (HBJ46_012040) yccS 2556791..2558926 (-) 2136 WP_002898422.1 YccS family putative transporter -
  HBJ46_RS12060 (HBJ46_012045) - 2558944..2559390 (-) 447 WP_002898425.1 YccF domain-containing protein -
  HBJ46_RS12065 (HBJ46_012050) helD 2559515..2561569 (+) 2055 WP_004179218.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=469784 HBJ46_RS12050 WP_004179217.1 2556181..2556777(+) (sxy/tfoX) [Klebsiella pneumoniae strain BA25665]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=469784 HBJ46_RS12050 WP_004179217.1 2556181..2556777(+) (sxy/tfoX) [Klebsiella pneumoniae strain BA25665]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51