Detailed information NTG0469754

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JSU10_RS05475
• Genome accession: NZ_CP069692
• Coordinates: 1147055..1148047 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli H20 strain MIN6
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1142055..1153047

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JSU10_RS05445 (JSU10_05445)	ispD	1142116..1142826 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JSU10_RS05450 (JSU10_05450)	ispF	1142826..1143305 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JSU10_RS05455 (JSU10_05455)	truD	1143302..1144351 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JSU10_RS05460 (JSU10_05460)	surE	1144332..1145093 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JSU10_RS05465 (JSU10_05465)	pcm	1145087..1145713 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JSU10_RS05470 (JSU10_05470)	nlpD	1145898..1146992 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
JSU10_RS05475 (JSU10_05475)	rpoS	1147055..1148047 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JSU10_RS05480 (JSU10_05480)	-	1148168..1148575 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
JSU10_RS05485 (JSU10_05485)	-	1148722..1149315 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
JSU10_RS05490 (JSU10_05490)	-	1149315..1150742 (+)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
JSU10_RS05495 (JSU10_05495)	-	1150753..1150989 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
JSU10_RS05500 (JSU10_05500)	ygbN	1151028..1152392 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=469754 JSU10_RS05475 WP_000081550.1 1147055..1148047(+) (rpoS) [Escherichia coli H20 strain MIN6]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=469754 JSU10_RS05475 WP_000081550.1 1147055..1148047(+) (rpoS) [Escherichia coli H20 strain MIN6]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715