Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HP2017_RS00085 Genome accession   NC_017374
Coordinates   11631..11912 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori 2017     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6631..16912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP2017_RS00065 (hp2017_0012) groES 7195..7551 (-) 357 WP_000671927.1 co-chaperone GroES -
  HP2017_RS00070 (hp2017_0013) dnaG 7838..9517 (+) 1680 WP_000601516.1 DNA primase -
  HP2017_RS00075 (hp2017_0014) - 9514..10565 (+) 1052 Protein_9 argininosuccinate synthase domain-containing protein -
  HP2017_RS00080 (hp2017_0015) - 10658..11485 (+) 828 WP_001154977.1 DUF5718 family protein -
  HP2017_RS00085 (hp2017_0016) comB2 11631..11912 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HP2017_RS00090 (hp2017_0017) comB3 11912..12175 (+) 264 WP_000584948.1 hypothetical protein Machinery gene
  HP2017_RS00095 (hp2017_0018) comB4 12177..14540 (+) 2364 WP_000890239.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HP2017_RS00100 (hp2017_0020) - 14845..16185 (+) 1341 WP_001938079.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=46972 HP2017_RS00085 WP_001272690.1 11631..11912(+) (comB2) [Helicobacter pylori 2017]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=46972 HP2017_RS00085 WP_001272690.1 11631..11912(+) (comB2) [Helicobacter pylori 2017]
ATGTCCGCTCATTTTTTGAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCCATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATCTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment