Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPIN_RS07425 | Genome accession | NC_017372 |
| Coordinates | 1558658..1559233 (+) | Length | 191 a.a. |
| NCBI ID | WP_001203593.1 | Uniprot ID | E8QEF6 |
| Organism | Helicobacter pylori India7 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1553658..1564233
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPIN_RS07400 (HPIN_07720) | uvrD | 1554346..1556394 (+) | 2049 | WP_014536231.1 | DNA helicase UvrD | - |
| HPIN_RS07405 (HPIN_07725) | flgA | 1556391..1557047 (+) | 657 | WP_000699077.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPIN_RS07410 (HPIN_07730) | - | 1557057..1557620 (+) | 564 | WP_000780118.1 | UbiX family flavin prenyltransferase | - |
| HPIN_RS07415 (HPIN_07735) | coaD | 1557620..1558093 (+) | 474 | WP_001169242.1 | pantetheine-phosphate adenylyltransferase | - |
| HPIN_RS07420 (HPIN_07740) | tmk | 1558095..1558670 (+) | 576 | WP_000289723.1 | dTMP kinase | - |
| HPIN_RS07425 (HPIN_07745) | comFC | 1558658..1559233 (+) | 576 | WP_001203593.1 | ComF family protein | Machinery gene |
| HPIN_RS07430 (HPIN_07750) | - | 1559264..1561300 (+) | 2037 | WP_001045369.1 | N-6 DNA methylase | - |
| HPIN_RS07435 (HPIN_07755) | - | 1561297..1562565 (+) | 1269 | WP_000580109.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21377.00 Da Isoelectric Point: 9.2745
>NTDB_id=46970 HPIN_RS07425 WP_001203593.1 1558658..1559233(+) (comFC) [Helicobacter pylori India7]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDKDLDYFLLDDII
TTGTTLKEALKYLKALNTKVHFAIALCNADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDKDLDYFLLDDII
TTGTTLKEALKYLKALNTKVHFAIALCNADE
Nucleotide
Download Length: 576 bp
>NTDB_id=46970 HPIN_RS07425 WP_001203593.1 1558658..1559233(+) (comFC) [Helicobacter pylori India7]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCCTTCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTAG
AATTTCGCGCCAACAACCCACGGGATTTCACCTTCAAAGGCGATAAAGATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACACAAAAGTGCACTTTGCGATCGCGCTTTG
CAACGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCCTTCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTAG
AATTTCGCGCCAACAACCCACGGGATTTCACCTTCAAAGGCGATAAAGATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACACAAAAGTGCACTTTGCGATCGCGCTTTG
CAACGCGGATGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.764 |
100 |
0.948 |