Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPIN_RS06860 Genome accession   NC_017372
Coordinates   1426160..1427473 (-) Length   437 a.a.
NCBI ID   WP_000653626.1    Uniprot ID   E8QDW5
Organism   Helicobacter pylori India7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1421160..1432473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPIN_RS06830 (HPIN_07120) nadC 1421623..1422444 (-) 822 WP_000404094.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPIN_RS06835 (HPIN_07125) nadA 1422444..1423454 (-) 1011 WP_001141781.1 quinolinate synthase NadA -
  HPIN_RS06840 (HPIN_07130) - 1423444..1424247 (-) 804 WP_000226142.1 phosphatidylserine decarboxylase -
  HPIN_RS06845 (HPIN_07135) - 1424241..1424747 (-) 507 WP_000953120.1 DUF6115 domain-containing protein -
  HPIN_RS06850 (HPIN_07140) - 1424760..1425254 (-) 495 WP_014536218.1 hypothetical protein -
  HPIN_RS06855 (HPIN_07145) mqnP 1425247..1426131 (-) 885 WP_000913915.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPIN_RS06860 (HPIN_07150) comEC/comE3 1426160..1427473 (-) 1314 WP_000653626.1 ComEC/Rec2 family competence protein Machinery gene
  HPIN_RS06865 (HPIN_07155) - 1427470..1428930 (-) 1461 WP_000349730.1 replicative DNA helicase -
  HPIN_RS06870 (HPIN_07160) - 1428941..1430341 (-) 1401 WP_000953991.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPIN_RS06875 (HPIN_07165) crdS 1430344..1431546 (-) 1203 WP_080005394.1 copper-sensing histidine kinase CrdS -
  HPIN_RS06880 (HPIN_07170) crdR 1431512..1432153 (-) 642 WP_001169784.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50278.26 Da        Isoelectric Point: 9.9128

>NTDB_id=46967 HPIN_RS06860 WP_000653626.1 1426160..1427473(-) (comEC/comE3) [Helicobacter pylori India7]
MKDKTFQGAFELLTTPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGRIKPCFFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDNAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLIRSFQAISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDRILSMPLAIPTISVPSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=46967 HPIN_RS06860 WP_000653626.1 1426160..1427473(-) (comEC/comE3) [Helicobacter pylori India7]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCGACAAGCCTGAACG
CTCAAATCTTGTTGCAATATCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAACTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAGGATCAAACCCTGCTT
TTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAGGATTTCAAATCGCATT
GGCGCCATTTCATTGACAACGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTAATACGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
CTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATCGCA
TTTTAAGCATGCCTTTAGCCATCCCTACGATTTCGGTTCCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E8QDW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

96.11

100

0.961

Multiple sequence alignment