Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HPIN_RS03705 Genome accession   NC_017372
Coordinates   789112..790314 (-) Length   400 a.a.
NCBI ID   WP_000814201.1    Uniprot ID   E8QG87
Organism   Helicobacter pylori India7     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 784112..795314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPIN_RS03680 (HPIN_03830) - 784123..784641 (-) 519 WP_000760560.1 hypothetical protein -
  HPIN_RS03685 (HPIN_03835) - 784638..785582 (-) 945 WP_000362467.1 CpaF/VirB11 family protein -
  HPIN_RS03690 (HPIN_03840) - 785587..785859 (-) 273 WP_000883380.1 hypothetical protein -
  HPIN_RS03695 (HPIN_03845) - 785877..786854 (-) 978 WP_000363088.1 hypothetical protein -
  HPIN_RS03700 (HPIN_03850) - 786867..789128 (-) 2262 WP_000730448.1 hypothetical protein -
  HPIN_RS03705 (HPIN_03855) comB10 789112..790314 (-) 1203 WP_000814201.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPIN_RS03710 (HPIN_03860) - 790311..791906 (-) 1596 WP_000621684.1 TrbG/VirB9 family P-type conjugative transfer protein -
  HPIN_RS03715 (HPIN_03865) - 791903..793072 (-) 1170 WP_000067671.1 type IV secretion system protein -
  HPIN_RS03720 (HPIN_03870) - 793065..793199 (-) 135 WP_000738747.1 hypothetical protein -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 44694.41 Da        Isoelectric Point: 9.9998

>NTDB_id=46962 HPIN_RS03705 WP_000814201.1 789112..790314(-) (comB10) [Helicobacter pylori India7]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTQPAIKPDTEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFITPNLDIFIPKPKDGEVLAEFFKEKKLLIKKSNEEVNSEEEI

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=46962 HPIN_RS03705 WP_000814201.1 789112..790314(-) (comB10) [Helicobacter pylori India7]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTCAACCAGCCATTAAGCCTGATACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGTGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAACAATAATCAAATCGGACAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCACAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTACCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACTACTAATCAAAAAATCAAACGAGGAAGTTAATAGTGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(175-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

53.846

97.5

0.525

Multiple sequence alignment