Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   GZ987_RS06080 Genome accession   NZ_CP059439
Coordinates   1195079..1195453 (-) Length   124 a.a.
NCBI ID   WP_002849740.1    Uniprot ID   -
Organism   Campylobacter fetus strain CFV08A1102-42A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1190079..1200453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZ987_RS06055 (GZ987_006055) tatB 1190742..1191197 (+) 456 WP_002849729.1 Sec-independent protein translocase protein TatB -
  GZ987_RS06060 (GZ987_006060) tatC 1191197..1191952 (+) 756 WP_002849731.1 twin-arginine translocase subunit TatC -
  GZ987_RS06065 (GZ987_006065) queA 1191949..1192968 (+) 1020 WP_002849734.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  GZ987_RS06070 (GZ987_006070) - 1192978..1194222 (+) 1245 WP_011732089.1 hypothetical protein -
  GZ987_RS06075 (GZ987_006075) - 1194208..1195071 (-) 864 WP_002849738.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  GZ987_RS06080 (GZ987_006080) dprB 1195079..1195453 (-) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  GZ987_RS06085 (GZ987_006085) dprA 1195450..1196217 (-) 768 WP_002849743.1 DNA-processing protein DprA Machinery gene
  GZ987_RS06090 (GZ987_006090) - 1196201..1197286 (-) 1086 WP_134864086.1 divergent polysaccharide deacetylase family protein -
  GZ987_RS06095 (GZ987_006095) ilvC 1197365..1198387 (-) 1023 WP_002849745.1 ketol-acid reductoisomerase -
  GZ987_RS06100 (GZ987_006100) - 1198534..1199346 (+) 813 WP_002849747.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13694.09 Da        Isoelectric Point: 8.4803

>NTDB_id=469610 GZ987_RS06080 WP_002849740.1 1195079..1195453(-) (dprB) [Campylobacter fetus strain CFV08A1102-42A]
MIVAIDVGLKRIGVAVAVLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKGGSCEDEMERRIKHFISLVGF
DSEIIYVDEAYSSCEASELSKDSKDGRFDSIAAMVILKRYLNIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=469610 GZ987_RS06080 WP_002849740.1 1195079..1195453(-) (dprB) [Campylobacter fetus strain CFV08A1102-42A]
TTGATAGTAGCTATCGATGTCGGACTAAAAAGAATAGGAGTTGCGGTTGCGGTTTTACCGACTGTTGTACTTCCTAGCGA
ACCTATTTTACGTAAAAATCGCAATCAGGCGGCGAAAGATACTTTAAAAATGTTAAAAGAAAAAAATGCGACAAAACTAG
TAGTCGGCTTGCCAAAAGGCGGCAGCTGCGAGGATGAAATGGAAAGACGAATTAAGCATTTTATCTCTTTAGTCGGTTTT
GATTCAGAGATAATTTATGTTGATGAAGCTTATAGCAGCTGCGAAGCTAGCGAACTGTCAAAAGATTCTAAAGACGGTAG
ATTTGATAGCATTGCCGCTATGGTGATTTTAAAAAGATATCTAAATATTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

50.388

100

0.524