Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   GZ988_RS06530 Genome accession   NZ_CP059437
Coordinates   1256516..1256890 (-) Length   124 a.a.
NCBI ID   WP_002849740.1    Uniprot ID   -
Organism   Campylobacter fetus strain CFViADRI545     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1251516..1261890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZ988_RS06505 (GZ988_006510) tatB 1252180..1252635 (+) 456 WP_002849729.1 Sec-independent protein translocase protein TatB -
  GZ988_RS06510 (GZ988_006515) tatC 1252635..1253390 (+) 756 WP_002849731.1 twin-arginine translocase subunit TatC -
  GZ988_RS06515 (GZ988_006520) queA 1253387..1254406 (+) 1020 WP_035170809.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  GZ988_RS06520 (GZ988_006525) - 1254416..1255624 (+) 1209 WP_065838969.1 hypothetical protein -
  GZ988_RS06525 (GZ988_006530) - 1255645..1256508 (-) 864 WP_002849738.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  GZ988_RS06530 (GZ988_006535) dprB 1256516..1256890 (-) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  GZ988_RS06535 (GZ988_006540) dprA 1256887..1257654 (-) 768 WP_002849743.1 DNA-processing protein DprA Machinery gene
  GZ988_RS06540 (GZ988_006545) - 1257638..1258723 (-) 1086 WP_134864086.1 divergent polysaccharide deacetylase family protein -
  GZ988_RS06545 (GZ988_006550) ilvC 1258802..1259824 (-) 1023 WP_002849745.1 ketol-acid reductoisomerase -
  GZ988_RS06550 (GZ988_006555) - 1259971..1260783 (+) 813 WP_002849747.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13694.09 Da        Isoelectric Point: 8.4803

>NTDB_id=469598 GZ988_RS06530 WP_002849740.1 1256516..1256890(-) (dprB) [Campylobacter fetus strain CFViADRI545]
MIVAIDVGLKRIGVAVAVLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKGGSCEDEMERRIKHFISLVGF
DSEIIYVDEAYSSCEASELSKDSKDGRFDSIAAMVILKRYLNIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=469598 GZ988_RS06530 WP_002849740.1 1256516..1256890(-) (dprB) [Campylobacter fetus strain CFViADRI545]
TTGATAGTAGCTATCGATGTCGGACTAAAAAGAATAGGAGTTGCGGTTGCGGTTTTACCGACTGTTGTACTTCCTAGCGA
ACCTATTTTACGTAAAAATCGCAATCAGGCGGCGAAAGATACTTTAAAAATGTTAAAAGAAAAAAATGCGACAAAACTAG
TAGTCGGCTTGCCAAAAGGCGGCAGCTGCGAGGATGAAATGGAAAGACGAATTAAGCATTTTATCTCTTTAGTCGGTTTT
GATTCAGAGATAATTTATGTTGATGAAGCTTATAGCAGCTGCGAAGCTAGCGAACTGTCAAAAGATTCTAAAGACGGTAG
ATTTGATAGCATTGCCGCTATGGTGATTTTAAAAAGATATCTAAATATTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

50.388

100

0.524