Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H1014_RS15915 Genome accession   NZ_CP059427
Coordinates   3305115..3305729 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain CIFR51929     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3300115..3310729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1014_RS15900 (H1014_15900) helD 3300339..3302393 (-) 2055 WP_096889538.1 DNA helicase IV -
  H1014_RS15905 (H1014_15905) - 3302519..3302965 (+) 447 WP_003035892.1 YccF domain-containing protein -
  H1014_RS15910 (H1014_15910) yccS 3302984..3305137 (+) 2154 WP_032941200.1 YccS family putative transporter -
  H1014_RS15915 (H1014_15915) sxy/tfoX 3305115..3305729 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  H1014_RS15920 (H1014_15920) sulA 3305947..3306456 (+) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  H1014_RS15925 (H1014_15925) ompA 3306814..3307872 (+) 1059 WP_003836839.1 porin OmpA -
  H1014_RS15930 (H1014_15930) matP 3307964..3308416 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  H1014_RS15935 (H1014_15935) - 3308602..3310362 (+) 1761 WP_136345707.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=469565 H1014_RS15915 WP_003035889.1 3305115..3305729(-) (sxy/tfoX) [Citrobacter freundii strain CIFR51929]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=469565 H1014_RS15915 WP_003035889.1 3305115..3305729(-) (sxy/tfoX) [Citrobacter freundii strain CIFR51929]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686