Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   H1Q60_RS15265 Genome accession   NZ_CP059405
Coordinates   2956060..2956638 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain MV2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2951060..2961638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1Q60_RS15245 (H1Q60_15245) - 2951561..2952853 (-) 1293 WP_014417354.1 globin-coupled sensor protein -
  H1Q60_RS15250 (H1Q60_15250) - 2952976..2954499 (-) 1524 WP_014417355.1 FAD-dependent oxidoreductase -
  H1Q60_RS15255 (H1Q60_15255) - 2954624..2955481 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  H1Q60_RS15260 (H1Q60_15260) - 2955512..2955745 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  H1Q60_RS15265 (H1Q60_15265) comK 2956060..2956638 (+) 579 WP_003155179.1 competence protein ComK Regulator
  H1Q60_RS15270 (H1Q60_15270) - 2956768..2956935 (+) 168 Protein_2963 MFS transporter -
  H1Q60_RS15275 (H1Q60_15275) - 2956937..2957887 (-) 951 Protein_2964 MFS transporter -
  H1Q60_RS15280 (H1Q60_15280) - 2957903..2958523 (-) 621 WP_017417412.1 TetR/AcrR family transcriptional regulator -
  H1Q60_RS15285 (H1Q60_15285) - 2958775..2959284 (-) 510 WP_007610501.1 ferritin-like domain-containing protein -
  H1Q60_RS15290 (H1Q60_15290) - 2959353..2960066 (-) 714 WP_079891285.1 DUF421 domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=469455 H1Q60_RS15265 WP_003155179.1 2956060..2956638(+) (comK) [Bacillus velezensis strain MV2]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=469455 H1Q60_RS15265 WP_003155179.1 2956060..2956638(+) (comK) [Bacillus velezensis strain MV2]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823