Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JSU14_RS08890 Genome accession   NZ_CP069657
Coordinates   1885755..1887182 (-) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli O89m:H10 strain MIN12     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1880755..1892182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSU14_RS08860 (JSU14_08865) yeeZ 1880810..1881634 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  JSU14_RS08865 (JSU14_08870) yeeY 1881680..1882609 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JSU14_RS08870 (JSU14_08875) yoeI 1882824..1882886 (+) 63 WP_010723108.1 membrane protein YoeI -
  JSU14_RS08875 (JSU14_08880) plaP 1882876..1884234 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JSU14_RS08880 (JSU14_08885) tsuA 1884413..1885471 (+) 1059 WP_000492333.1 thiosulfate utilization transporter TsuA/YeeE -
  JSU14_RS08885 (JSU14_08890) tsuB 1885485..1885712 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JSU14_RS08890 (JSU14_08895) sbcB 1885755..1887182 (-) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  JSU14_RS08895 (JSU14_08900) dacD 1887391..1888557 (+) 1167 WP_000830144.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JSU14_RS08900 (JSU14_08905) sbmC 1888676..1889149 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  JSU14_RS08905 (JSU14_08910) yeeA 1889347..1890405 (+) 1059 WP_001200890.1 FUSC family protein -
  JSU14_RS08910 (JSU14_08915) tmaR 1890577..1890906 (+) 330 WP_000450409.1 DUF496 family protein -
  JSU14_RS26250 (JSU14_08920) - 1891007..1891189 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  JSU14_RS25855 - 1891309..1891389 (+) 81 WP_023441679.1 hypothetical protein -
  JSU14_RS08925 (JSU14_08930) - 1891678..1891758 (-) 81 Protein_1764 hypothetical protein -
  JSU14_RS08930 (JSU14_08935) yeeW 1891804..1891998 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=469445 JSU14_RS08890 WP_000980539.1 1885755..1887182(-) (sbcB) [Escherichia coli O89m:H10 strain MIN12]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=469445 JSU14_RS08890 WP_000980539.1 1885755..1887182(-) (sbcB) [Escherichia coli O89m:H10 strain MIN12]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581