Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   H1Q60_RS11440 Genome accession   NZ_CP059405
Coordinates   2211481..2211918 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain MV2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2206481..2216918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1Q60_RS11415 (H1Q60_11415) - 2207511..2208647 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  H1Q60_RS11420 (H1Q60_11420) - 2208662..2209096 (+) 435 WP_014416871.1 RDD family protein -
  H1Q60_RS11425 (H1Q60_11425) - 2209168..2209491 (+) 324 WP_007409357.1 YckD family protein -
  H1Q60_RS11430 (H1Q60_11430) - 2209595..2211043 (+) 1449 Protein_2220 family 1 glycosylhydrolase -
  H1Q60_RS11435 (H1Q60_11435) nin/comJ 2211062..2211460 (-) 399 WP_017419379.1 competence protein ComJ Regulator
  H1Q60_RS11440 (H1Q60_11440) nucA/comI 2211481..2211918 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  H1Q60_RS11445 (H1Q60_11445) hxlB 2212249..2212806 (-) 558 WP_065180943.1 6-phospho-3-hexuloisomerase -
  H1Q60_RS11450 (H1Q60_11450) hxlA 2212803..2213438 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  H1Q60_RS11455 (H1Q60_11455) - 2213670..2214032 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=469445 H1Q60_RS11440 WP_003156588.1 2211481..2211918(-) (nucA/comI) [Bacillus velezensis strain MV2]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=469445 H1Q60_RS11440 WP_003156588.1 2211481..2211918(-) (nucA/comI) [Bacillus velezensis strain MV2]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGTTACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641