Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H1Q60_RS09865 Genome accession   NZ_CP059405
Coordinates   1908812..1909102 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain MV2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1903812..1914102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1Q60_RS09825 (H1Q60_09825) darA 1903829..1904158 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  H1Q60_RS09830 (H1Q60_09830) - 1904171..1904611 (+) 441 WP_004264730.1 DUF327 family protein -
  H1Q60_RS09835 (H1Q60_09835) holB 1904623..1905612 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  H1Q60_RS09840 (H1Q60_09840) ricT 1905615..1906442 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  H1Q60_RS09845 (H1Q60_09845) yabA 1906457..1906816 (+) 360 WP_017419498.1 replication initiation-control protein YabA -
  H1Q60_RS09850 (H1Q60_09850) - 1906877..1907620 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  H1Q60_RS09855 (H1Q60_09855) - 1907607..1907906 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  H1Q60_RS09860 (H1Q60_09860) rsmI 1907881..1908762 (+) 882 WP_017419497.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  H1Q60_RS09865 (H1Q60_09865) abrB 1908812..1909102 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  H1Q60_RS09870 (H1Q60_09870) metG 1909585..1911576 (+) 1992 WP_017419496.1 methionine--tRNA ligase -
  H1Q60_RS09875 (H1Q60_09875) - 1911653..1912420 (+) 768 WP_017419495.1 TatD family hydrolase -
  H1Q60_RS09880 (H1Q60_09880) - 1912555..1913880 (+) 1326 WP_104843579.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=469440 H1Q60_RS09865 WP_169510469.1 1908812..1909102(-) (abrB) [Bacillus velezensis strain MV2]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=469440 H1Q60_RS09865 WP_169510469.1 1908812..1909102(-) (abrB) [Bacillus velezensis strain MV2]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979