Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   H1Q60_RS09635 Genome accession   NZ_CP059405
Coordinates   1866297..1867409 (+) Length   370 a.a.
NCBI ID   WP_053285270.1    Uniprot ID   A0A411A1C1
Organism   Bacillus velezensis strain MV2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1861297..1872409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1Q60_RS09610 (H1Q60_09610) rnpA 1862010..1862360 (-) 351 WP_004392944.1 ribonuclease P protein component -
  H1Q60_RS09615 (H1Q60_09615) rpmH 1862514..1862648 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  H1Q60_RS09620 (H1Q60_09620) dnaA 1863270..1864610 (+) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  H1Q60_RS09625 (H1Q60_09625) dnaN 1864795..1865931 (+) 1137 WP_014416704.1 DNA polymerase III subunit beta -
  H1Q60_RS09630 (H1Q60_09630) rlbA 1866066..1866281 (+) 216 WP_065180698.1 ribosome maturation protein RlbA -
  H1Q60_RS09635 (H1Q60_09635) recF 1866297..1867409 (+) 1113 WP_053285270.1 DNA replication/repair protein RecF Machinery gene
  H1Q60_RS09640 (H1Q60_09640) - 1867427..1867672 (+) 246 WP_004392908.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  H1Q60_RS09645 (H1Q60_09645) gyrB 1867729..1869645 (+) 1917 WP_014720600.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  H1Q60_RS09650 (H1Q60_09650) gyrA 1869861..1872320 (+) 2460 WP_025650119.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42429.38 Da        Isoelectric Point: 7.3309

>NTDB_id=469438 H1Q60_RS09635 WP_053285270.1 1866297..1867409(+) (recF) [Bacillus velezensis strain MV2]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKNLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGTLVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=469438 H1Q60_RS09635 WP_053285270.1 1866297..1867409(+) (recF) [Bacillus velezensis strain MV2]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGAAACGGGGAT
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCCCAGGTGAGGAGGAGAT
TTCTCGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAAATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACGTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACAAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTACGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411A1C1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.054

100

0.941