Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPGAM_RS06790 Genome accession   NC_017371
Coordinates   1412059..1413372 (-) Length   437 a.a.
NCBI ID   WP_000653524.1    Uniprot ID   -
Organism   Helicobacter pylori Gambia94/24     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1407059..1418372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPGAM_RS06760 (HPGAM_07015) nadC 1407522..1408343 (-) 822 WP_000404045.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPGAM_RS06765 (HPGAM_07020) nadA 1408343..1409353 (-) 1011 WP_001141800.1 quinolinate synthase NadA -
  HPGAM_RS06770 (HPGAM_07025) - 1409340..1410146 (-) 807 WP_000226214.1 phosphatidylserine decarboxylase -
  HPGAM_RS06775 (HPGAM_07030) - 1410140..1410646 (-) 507 WP_000953090.1 DUF6115 domain-containing protein -
  HPGAM_RS06780 (HPGAM_07035) - 1410659..1411153 (-) 495 WP_001893204.1 hypothetical protein -
  HPGAM_RS06785 (HPGAM_07040) mqnP 1411146..1411988 (-) 843 WP_228839910.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPGAM_RS06790 (HPGAM_07045) comEC/comE3 1412059..1413372 (-) 1314 WP_000653524.1 ComEC/Rec2 family competence protein Machinery gene
  HPGAM_RS06795 (HPGAM_07050) - 1413369..1414844 (-) 1476 WP_000349671.1 replicative DNA helicase -
  HPGAM_RS06800 (HPGAM_07055) - 1414855..1416249 (-) 1395 WP_000953967.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPGAM_RS06805 (HPGAM_07060) crdS 1416252..1417454 (-) 1203 WP_080005458.1 copper-sensing histidine kinase CrdS -
  HPGAM_RS06810 (HPGAM_07065) crdR 1417420..1418061 (-) 642 WP_001169733.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50229.11 Da        Isoelectric Point: 9.8607

>NTDB_id=46941 HPGAM_RS06790 WP_000653524.1 1412059..1413372(-) (comEC/comE3) [Helicobacter pylori Gambia94/24]
MKDKTFHGAFELLSTPKEYSWCGVVLSLLLAINLYLEYLNHQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSAHSNALVGNLYRALFIGDNL
NKDLRDKANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFFKRSFQAIVLS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHFLSMPLTIPTISISSPLWLLGAHLFLT
IVSARFFKVYLSMNVLSMGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=46941 HPGAM_RS06790 WP_000653524.1 1412059..1413372(-) (comEC/comE3) [Helicobacter pylori Gambia94/24]
TTGAAAGATAAAACCTTTCATGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTCATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCGATTAACCTTTATTTAGAATACTTGAATCACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCCTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCTAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAGCCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGATAGCGCCCATTCCAACGCTTTGGTGGGTAATTTGTATCGAGCGCTCTTTATAGGGGATAATTTG
AATAAAGATTTAAGAGACAAGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGGTTTCATTTAGGGATTTT
AAGCGCGAGCGTGTATTTCCTTTTTTCGCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTCTTGGTGTGGGTTTTTTTGCTAGGGTATTTACTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATTTTGAGTTTTAAACTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTCAAGCGATCGTTTCAAGCGATCGTTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATCATT
TTTTAAGCATGCCTTTAACCATCCCTACGATTTCAATCTCTTCGCCCTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTGTGAGCGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTAAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.135

100

0.931

Multiple sequence alignment