Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H1Q60_RS01875 Genome accession   NZ_CP059405
Coordinates   353085..353852 (-) Length   255 a.a.
NCBI ID   WP_106067885.1    Uniprot ID   -
Organism   Bacillus velezensis strain MV2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 348085..358852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1Q60_RS01855 (H1Q60_01855) - 348288..349100 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  H1Q60_RS01860 (H1Q60_01860) ccpN 349126..349764 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  H1Q60_RS01865 (H1Q60_01865) glyS 349864..351903 (-) 2040 WP_106067887.1 glycine--tRNA ligase subunit beta -
  H1Q60_RS01870 (H1Q60_01870) glyQ 351896..352783 (-) 888 WP_106067886.1 glycine--tRNA ligase subunit alpha -
  H1Q60_RS01875 (H1Q60_01875) recO 353085..353852 (-) 768 WP_106067885.1 DNA repair protein RecO Machinery gene
  H1Q60_RS01880 (H1Q60_01880) - 353889..354032 (-) 144 WP_007408286.1 YqzL family protein -
  H1Q60_RS01885 (H1Q60_01885) era 354188..355093 (-) 906 WP_007408285.1 GTPase Era -
  H1Q60_RS01890 (H1Q60_01890) - 355074..355484 (-) 411 WP_003152976.1 cytidine deaminase -
  H1Q60_RS01895 (H1Q60_01895) - 355608..355982 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  H1Q60_RS01900 (H1Q60_01900) ybeY 355963..356436 (-) 474 WP_053284930.1 rRNA maturation RNase YbeY -
  H1Q60_RS01905 (H1Q60_01905) - 356437..358569 (-) 2133 WP_065180881.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29329.00 Da        Isoelectric Point: 9.0171

>NTDB_id=469409 H1Q60_RS01875 WP_106067885.1 353085..353852(-) (recO) [Bacillus velezensis strain MV2]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSRDG
TFHFSVRDNGFICHRCFGKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNELKRVIDLYYEEYSGLYLKSKRFL
DQMESMKHLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=469409 H1Q60_RS01875 WP_106067885.1 353085..353852(-) (recO) [Bacillus velezensis strain MV2]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCTGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGAAGGGACTGACCCGGACGTGATCACCTTCA
TCGTTCAGATGAAAATGCTCGGCGTCATGGGACTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCCGGGACGGG
ACGTTTCATTTTTCGGTAAGAGATAATGGTTTTATCTGCCACCGCTGCTTTGGAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCATTAAAACAGGAAA
CCAAAAACGAACTTAAACGGGTTATCGATCTGTATTATGAGGAATATTCAGGGCTTTATTTAAAGTCTAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGCACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

90.588

100

0.906