Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   FOLKNPGA_RS17040 Genome accession   NZ_CP059400
Coordinates   3885112..3885795 (-) Length   227 a.a.
NCBI ID   WP_182351008.1    Uniprot ID   -
Organism   Legionella sp. PC1000     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3880112..3890795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOLKNPGA_RS17015 (FOLKNPGA_03460) gap 3880571..3881563 (+) 993 WP_182351005.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  FOLKNPGA_RS17020 (FOLKNPGA_03461) - 3881688..3882878 (+) 1191 WP_182351006.1 phosphoglycerate kinase -
  FOLKNPGA_RS17025 (FOLKNPGA_03462) pyk 3882862..3884280 (+) 1419 WP_182351007.1 pyruvate kinase -
  FOLKNPGA_RS17040 (FOLKNPGA_03465) rocC 3885112..3885795 (-) 684 WP_182351008.1 ProQ/FinO family protein Regulator
  FOLKNPGA_RS17045 (FOLKNPGA_03466) - 3886067..3886255 (+) 189 WP_182351009.1 hypothetical protein -
  FOLKNPGA_RS17050 (FOLKNPGA_03467) dapB 3886277..3887008 (+) 732 WP_182351010.1 4-hydroxy-tetrahydrodipicolinate reductase -
  FOLKNPGA_RS17055 (FOLKNPGA_03468) - 3887088..3889556 (-) 2469 WP_182351011.1 oxidoreductase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25516.27 Da        Isoelectric Point: 10.4297

>NTDB_id=469395 FOLKNPGA_RS17040 WP_182351008.1 3885112..3885795(-) (rocC) [Legionella sp. PC1000]
MRRQELHPRTAVINKAQKNKSKKARTDALLWLAANFPAAFDNSLRIQPLKVGIMDDILLYADKAEEAGISKSKLREAVVL
FTRRLDYLACLKLREARVDLHGVEVGAVSEEEAEHAALKIKKRVEKSVRNARKVQAEKPTQSSSNQQSSSFQAKIMSQSP
TPAEDHFPTYPIRSSTYNTLNAPAQPVKTTAVVVKHKTTKQYDPDVVARLKEKLGLSRNEKKEEITE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=469395 FOLKNPGA_RS17040 WP_182351008.1 3885112..3885795(-) (rocC) [Legionella sp. PC1000]
ATGAGAAGACAAGAGCTGCACCCACGCACTGCCGTTATTAATAAAGCTCAAAAAAATAAGTCTAAAAAAGCACGAACAGA
CGCATTATTGTGGCTCGCTGCAAATTTTCCCGCAGCATTCGATAATTCGTTACGAATCCAGCCGTTAAAAGTGGGGATTA
TGGATGATATTTTGCTTTATGCGGATAAGGCGGAAGAAGCAGGTATTTCCAAAAGTAAATTAAGGGAGGCAGTGGTTTTA
TTTACACGTCGACTTGATTATTTGGCATGCCTGAAGCTGCGAGAAGCACGCGTTGATTTGCACGGTGTCGAAGTCGGAGC
AGTGAGTGAAGAGGAAGCAGAACACGCAGCACTTAAGATTAAAAAGCGTGTTGAAAAAAGTGTAAGAAACGCTCGTAAAG
TTCAGGCAGAAAAACCAACTCAATCCAGTTCGAATCAGCAAAGTTCAAGTTTTCAAGCGAAAATAATGAGTCAATCACCT
ACACCTGCAGAGGATCATTTTCCTACTTATCCAATACGCTCCTCAACGTATAATACTTTGAATGCACCCGCCCAACCGGT
AAAGACAACGGCGGTTGTTGTGAAGCATAAAACTACAAAACAGTATGATCCCGATGTTGTAGCACGTTTGAAAGAGAAAT
TGGGACTGTCTCGGAATGAGAAAAAAGAAGAAATTACCGAATAG

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(27-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

67.391

100

0.683