Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FOLKNPGA_RS11895 Genome accession   NZ_CP059400
Coordinates   2711827..2712156 (-) Length   109 a.a.
NCBI ID   WP_182350110.1    Uniprot ID   -
Organism   Legionella sp. PC1000     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2706827..2717156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOLKNPGA_RS11880 (FOLKNPGA_02414) mreC 2707257..2708162 (-) 906 WP_182352849.1 rod shape-determining protein MreC -
  FOLKNPGA_RS11885 (FOLKNPGA_02415) - 2708140..2709177 (-) 1038 WP_003636696.1 rod shape-determining protein -
  FOLKNPGA_RS11890 (FOLKNPGA_02416) - 2709501..2711735 (+) 2235 WP_182350109.1 hypothetical protein -
  FOLKNPGA_RS11895 (FOLKNPGA_02417) comEA 2711827..2712156 (-) 330 WP_182350110.1 helix-hairpin-helix domain-containing protein Machinery gene
  FOLKNPGA_RS11900 (FOLKNPGA_02418) - 2712647..2714050 (-) 1404 WP_182350111.1 M20 family metallopeptidase -
  FOLKNPGA_RS11905 (FOLKNPGA_02419) - 2714025..2715116 (-) 1092 WP_182350112.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  FOLKNPGA_RS11910 (FOLKNPGA_02420) nadC 2715113..2715955 (-) 843 WP_182350113.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11914.03 Da        Isoelectric Point: 10.7484

>NTDB_id=469388 FOLKNPGA_RS11895 WP_182350110.1 2711827..2712156(-) (comEA) [Legionella sp. PC1000]
MKAKFIAAVLSLSVITLSAHAVIAKENSNLKKPPVVLHKIDLNTADLSMLTGSVKGIGKKRAEAIIAYRKSHHGFKSLEE
LAEVKGLGQHFVTANRDKLNQVFVVNRIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=469388 FOLKNPGA_RS11895 WP_182350110.1 2711827..2712156(-) (comEA) [Legionella sp. PC1000]
ATGAAAGCAAAATTTATTGCTGCTGTATTGTCATTATCTGTAATTACTCTATCTGCTCATGCAGTCATTGCTAAAGAAAA
TTCGAACCTGAAAAAGCCTCCTGTAGTACTTCATAAAATTGATCTGAATACTGCTGATTTATCCATGCTTACCGGTTCGG
TTAAAGGCATAGGAAAGAAACGAGCCGAAGCCATAATCGCCTATCGTAAAAGCCATCATGGATTTAAATCTTTAGAAGAG
CTTGCTGAAGTGAAGGGCCTGGGTCAACATTTTGTGACTGCGAATCGAGATAAATTGAATCAAGTGTTTGTTGTTAATAG
GATAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(38-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Legionella pneumophila str. Paris

61.468

100

0.615
  comEA Legionella pneumophila strain ERS1305867

61.468

100

0.615