Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   FOLKNPGA_RS10115 Genome accession   NZ_CP059400
Coordinates   2304793..2305131 (-) Length   112 a.a.
NCBI ID   WP_182352828.1    Uniprot ID   -
Organism   Legionella sp. PC1000     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2305323..2306072 2304793..2305131 flank 192


Gene organization within MGE regions


Location: 2304793..2306072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOLKNPGA_RS10115 (FOLKNPGA_02057) pilZ 2304793..2305131 (-) 339 WP_182352828.1 PilZ domain-containing protein Machinery gene
  FOLKNPGA_RS10120 (FOLKNPGA_02058) - 2305323..2306072 (+) 750 WP_058441825.1 IS5 family transposase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12447.52 Da        Isoelectric Point: 5.0163

>NTDB_id=469383 FOLKNPGA_RS10115 WP_182352828.1 2304793..2305131(-) (pilZ) [Legionella sp. PC1000]
MDTIPQINCTFLNESALYAAYMPFIKGGGLFIRTNSDYLFGSMVKLLIKLIDEDELYVVDGKVIWITPKGAQANKVPGIG
VQFIGENSRYLCNKIETYLAGMLKSSQLTDTI

Nucleotide


Download         Length: 339 bp        

>NTDB_id=469383 FOLKNPGA_RS10115 WP_182352828.1 2304793..2305131(-) (pilZ) [Legionella sp. PC1000]
ATGGATACAATTCCTCAAATCAATTGCACATTTCTTAATGAATCAGCACTATATGCAGCTTATATGCCTTTTATAAAAGG
AGGCGGATTATTTATCCGTACTAATAGCGATTATTTGTTTGGTTCAATGGTTAAGTTATTGATTAAATTAATAGATGAAG
ATGAACTCTACGTAGTCGATGGTAAGGTGATTTGGATTACTCCCAAAGGCGCTCAGGCTAATAAAGTACCTGGAATAGGG
GTACAATTTATTGGTGAAAACAGCCGCTACCTGTGTAATAAAATAGAGACCTATTTAGCAGGTATGTTAAAATCCTCGCA
ATTAACCGATACAATTTAG

Domains

Predicted by InterproScan.

PilZ domain (PilZ)

(6-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

68.142

100

0.688
  pilZ Legionella pneumophila strain ERS1305867

68.142

100

0.688