Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPGAM_RS00090 Genome accession   NC_017371
Coordinates   13926..14207 (+) Length   93 a.a.
NCBI ID   WP_001277276.1    Uniprot ID   -
Organism   Helicobacter pylori Gambia94/24     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8926..19207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPGAM_RS00070 (HPGAM_00055) groES 9500..9856 (-) 357 WP_000671962.1 co-chaperone GroES -
  HPGAM_RS00075 (HPGAM_00060) dnaG 10133..11812 (+) 1680 WP_000601597.1 DNA primase -
  HPGAM_RS00080 (HPGAM_00065) - 11809..12861 (+) 1053 WP_000809445.1 MnmA/TRMU family protein -
  HPGAM_RS00085 (HPGAM_00070) - 12954..13781 (+) 828 WP_001154925.1 DUF5718 family protein -
  HPGAM_RS00090 (HPGAM_00075) comB2 13926..14207 (+) 282 WP_001277276.1 TrbC/VirB2 family protein Machinery gene
  HPGAM_RS00095 (HPGAM_00080) comB3 14207..14470 (+) 264 WP_000584953.1 hypothetical protein Machinery gene
  HPGAM_RS00100 (HPGAM_00085) comB4 14472..16835 (+) 2364 WP_000890474.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPGAM_RS00105 (HPGAM_00090) - 17140..18480 (+) 1341 WP_014535910.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10517.80 Da        Isoelectric Point: 9.0456

>NTDB_id=46925 HPGAM_RS00090 WP_001277276.1 13926..14207(+) (comB2) [Helicobacter pylori Gambia94/24]
MSAYFLKIVFLVGMCVSSLLAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=46925 HPGAM_RS00090 WP_001277276.1 13926..14207(+) (comB2) [Helicobacter pylori Gambia94/24]
ATGTCCGCTTATTTTTTGAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGCTCGCTGAAGGATTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCCATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATCTTATTCACGATCCTTGGCGTGGTGTTTGGGATCTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978

Multiple sequence alignment