Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HPF16_RS07040 Genome accession   NC_017368
Coordinates   1435096..1435671 (-) Length   191 a.a.
NCBI ID   WP_001203613.1    Uniprot ID   -
Organism   Helicobacter pylori F16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1430096..1440671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF16_RS08110 - 1431829..1433036 (-) 1208 Protein_1350 restriction endonuclease subunit S -
  HPF16_RS07035 (HPF16_1369) - 1433033..1435063 (-) 2031 WP_001043539.1 N-6 DNA methylase -
  HPF16_RS07040 (HPF16_1370) comFC 1435096..1435671 (-) 576 WP_001203613.1 ComF family protein Machinery gene
  HPF16_RS07045 (HPF16_1371) tmk 1435659..1436234 (-) 576 WP_000289743.1 dTMP kinase -
  HPF16_RS07050 (HPF16_1372) coaD 1436236..1436709 (-) 474 WP_001169263.1 pantetheine-phosphate adenylyltransferase -
  HPF16_RS07055 (HPF16_1373) - 1436709..1437272 (-) 564 WP_000780116.1 UbiX family flavin prenyltransferase -
  HPF16_RS07060 (HPF16_1374) flgA 1437282..1437938 (-) 657 WP_000793000.1 flagellar basal body P-ring formation chaperone FlgA -
  HPF16_RS07065 (HPF16_1375) uvrD 1437935..1439980 (-) 2046 WP_000345181.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21297.91 Da        Isoelectric Point: 9.0901

>NTDB_id=46923 HPF16_RS07040 WP_001203613.1 1435096..1435671(-) (comFC) [Helicobacter pylori F16]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEMEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKVKSFYSHSAALLKGFCQGNLKPTYGRLRAINAVSYAGKSLEFRANNPRDFTFKGDKDLDYFLLDDII
TTGTTLKEALKYLKTLNTKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=46923 HPF16_RS07040 WP_001203613.1 1435096..1435671(-) (comFC) [Helicobacter pylori F16]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTGAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATGGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGACGATAAAGTCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTATTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGACAAAGATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGCGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.241

100

0.942

Multiple sequence alignment