Detailed information
Bioinformatically predicted
Overview
| Name | comEC/comE3 | Type | Machinery gene |
| Locus tag | HPF16_RS00225 | Genome accession | NC_017368 |
| Coordinates | 45394..46707 (+) | Length | 437 a.a. |
| NCBI ID | WP_000653544.1 | Uniprot ID | - |
| Organism | Helicobacter pylori F16 | ||
| Function | ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 40394..51707
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPF16_RS00205 (HPF16_0034) | crdR | 40720..41361 (+) | 642 | WP_001169783.1 | copper response regulator transcription factor CrdR | - |
| HPF16_RS00210 (HPF16_0035) | crdS | 41327..42529 (+) | 1203 | WP_096000929.1 | copper-sensing histidine kinase CrdS | - |
| HPF16_RS00215 (HPF16_0036) | - | 42532..43926 (+) | 1395 | WP_000954075.1 | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | - |
| HPF16_RS00220 (HPF16_0037) | - | 43937..45397 (+) | 1461 | WP_000349771.1 | replicative DNA helicase | - |
| HPF16_RS00225 (HPF16_0038) | comEC/comE3 | 45394..46707 (+) | 1314 | WP_000653544.1 | ComEC/Rec2 family competence protein | Machinery gene |
| HPF16_RS00230 (HPF16_0039) | mqnP | 46736..47620 (+) | 885 | WP_000913962.1 | menaquinone biosynthesis prenyltransferase MqnP | - |
| HPF16_RS00235 (HPF16_0040) | - | 47613..48107 (+) | 495 | WP_041200589.1 | hypothetical protein | - |
| HPF16_RS00240 (HPF16_0041) | - | 48120..48623 (+) | 504 | WP_000953106.1 | DUF6115 domain-containing protein | - |
| HPF16_RS00245 (HPF16_0042) | - | 48620..49423 (+) | 804 | WP_000561100.1 | phosphatidylserine decarboxylase | - |
| HPF16_RS00250 (HPF16_0043) | nadA | 49413..50423 (+) | 1011 | WP_001141774.1 | quinolinate synthase NadA | - |
| HPF16_RS00255 (HPF16_0044) | nadC | 50423..51244 (+) | 822 | WP_000404077.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 437 a.a. Molecular weight: 50090.10 Da Isoelectric Point: 9.7741
>NTDB_id=46910 HPF16_RS00225 WP_000653544.1 45394..46707(+) (comEC/comE3) [Helicobacter pylori F16]
MKDKTFQGAFELLATPKEYLLCGVILSLLLVLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVHHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGARLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTIFVFSPLWLLGTHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG
MKDKTFQGAFELLATPKEYLLCGVILSLLLVLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVHHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGARLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTIFVFSPLWLLGTHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG
Nucleotide
Download Length: 1314 bp
>NTDB_id=46910 HPF16_RS00225 WP_000653544.1 45394..46707(+) (comEC/comE3) [Helicobacter pylori F16]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTGCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGTGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCACCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGATTTAAGGGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGCAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTTTGTTTTTTCGCCTTTATGGCTTTTGGGGACGCATTTATTTTTAACG
ATTCTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTGCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGTGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCACCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGATTTAAGGGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGCAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTTTGTTTTTTCGCCTTTATGGCTTTTGGGGACGCATTTATTTTTAACG
ATTCTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEC/comE3 | Helicobacter pylori 26695 |
94.05 |
100 |
0.941 |