Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HPF16_RS00095 | Genome accession | NC_017368 |
| Coordinates | 13802..14065 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori F16 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 8802..19065
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPF16_RS00070 (HPF16_0009) | groES | 9099..9455 (-) | 357 | WP_000671953.1 | co-chaperone GroES | - |
| HPF16_RS00075 (HPF16_0010) | dnaG | 9730..11409 (+) | 1680 | WP_000601551.1 | DNA primase | - |
| HPF16_RS00080 (HPF16_0011) | - | 11406..12458 (+) | 1053 | WP_000721196.1 | MnmA/TRMU family protein | - |
| HPF16_RS00085 (HPF16_0012) | - | 12549..13376 (+) | 828 | WP_001154871.1 | DUF5718 family protein | - |
| HPF16_RS00090 (HPF16_0013) | comB2 | 13521..13802 (+) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| HPF16_RS00095 (HPF16_0014) | comB3 | 13802..14065 (+) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| HPF16_RS00100 (HPF16_0015) | comB4 | 14068..16431 (+) | 2364 | WP_000890539.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HPF16_RS00105 (HPF16_0016) | - | 16752..18092 (+) | 1341 | WP_014535702.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=46907 HPF16_RS00095 WP_000584955.1 13802..14065(+) (comB3) [Helicobacter pylori F16]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=46907 HPF16_RS00095 WP_000584955.1 13802..14065(+) (comB3) [Helicobacter pylori F16]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |