Detailed information NTG0468993

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JSQ90_RS06965
• Genome accession: NZ_CP069633
• Coordinates: 1473283..1474275 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SSGw1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1468283..1479275

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JSQ90_RS06945 (JSQ90_06895)	ygbM	1468914..1469690 (+)	777	WP_001136915.1	HPr family phosphocarrier protein	-
JSQ90_RS06950 (JSQ90_06900)	ygbN	1469779..1471143 (+)	1365	WP_000104433.1	GntP family transporter	-
JSQ90_RS06955 (JSQ90_06905)	-	1471286..1472329 (-)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
JSQ90_RS06960 (JSQ90_06910)	-	1472554..1473105 (+)	552	WP_001179443.1	flavodoxin family protein	-
JSQ90_RS06965 (JSQ90_06915)	rpoS	1473283..1474275 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JSQ90_RS06970 (JSQ90_06920)	nlpD	1474338..1475432 (-)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
JSQ90_RS06975 (JSQ90_06925)	pcm	1475617..1476243 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
JSQ90_RS06980 (JSQ90_06930)	surE	1476237..1476998 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JSQ90_RS06985 (JSQ90_06935)	truD	1476979..1478028 (-)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
JSQ90_RS06990 (JSQ90_06940)	ispF	1478025..1478504 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JSQ90_RS06995 (JSQ90_06945)	ispD	1478504..1479214 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=468993 JSQ90_RS06965 WP_000081550.1 1473283..1474275(-) (rpoS) [Escherichia coli strain SSGw1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=468993 JSQ90_RS06965 WP_000081550.1 1473283..1474275(-) (rpoS) [Escherichia coli strain SSGw1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715