Detailed information
Bioinformatically predicted
Overview
| Name | comEC/comE3 | Type | Machinery gene |
| Locus tag | HPF57_RS00220 | Genome accession | NC_017367 |
| Coordinates | 45889..47202 (+) | Length | 437 a.a. |
| NCBI ID | WP_000653607.1 | Uniprot ID | - |
| Organism | Helicobacter pylori F57 | ||
| Function | ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 40889..52202
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPF57_RS00200 (HPF57_0035) | crdR | 41209..41850 (+) | 642 | WP_001169804.1 | copper response regulator transcription factor CrdR | - |
| HPF57_RS00205 (HPF57_0036) | crdS | 41816..43018 (+) | 1203 | WP_096001229.1 | copper-sensing histidine kinase CrdS | - |
| HPF57_RS00210 (HPF57_0037) | - | 43021..44415 (+) | 1395 | WP_000954042.1 | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | - |
| HPF57_RS00215 (HPF57_0038) | - | 44426..45892 (+) | 1467 | WP_000349777.1 | replicative DNA helicase | - |
| HPF57_RS00220 (HPF57_0039) | comEC/comE3 | 45889..47202 (+) | 1314 | WP_000653607.1 | ComEC/Rec2 family competence protein | Machinery gene |
| HPF57_RS00225 (HPF57_0040) | mqnP | 47273..48115 (+) | 843 | WP_232500958.1 | menaquinone biosynthesis prenyltransferase MqnP | - |
| HPF57_RS00230 (HPF57_0041) | - | 48108..48602 (+) | 495 | WP_001867294.1 | hypothetical protein | - |
| HPF57_RS00235 (HPF57_0042) | - | 48615..49118 (+) | 504 | WP_000953083.1 | DUF6115 domain-containing protein | - |
| HPF57_RS00240 (HPF57_0043) | - | 49115..49918 (+) | 804 | WP_000561098.1 | phosphatidylserine decarboxylase | - |
| HPF57_RS00245 (HPF57_0044) | nadA | 49908..50918 (+) | 1011 | WP_001141788.1 | quinolinate synthase NadA | - |
| HPF57_RS00250 (HPF57_0046) | nadC | 50918..51739 (+) | 822 | WP_000404075.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 437 a.a. Molecular weight: 50103.09 Da Isoelectric Point: 9.8918
>NTDB_id=46890 HPF57_RS00220 WP_000653607.1 45889..47202(+) (comEC/comE3) [Helicobacter pylori F57]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPISLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFVVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVSSPLWLLGAHLFLT
ILSVRFFKVYLSINVLSAGFFLYCCYQYIIMPSLIVG
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPISLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFVVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVSSPLWLLGAHLFLT
ILSVRFFKVYLSINVLSAGFFLYCCYQYIIMPSLIVG
Nucleotide
Download Length: 1314 bp
>NTDB_id=46890 HPF57_RS00220 WP_000653607.1 45889..47202(+) (comEC/comE3) [Helicobacter pylori F57]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCACTCAATCTTTATTTAGAGTATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTATAAGCCTGAACG
CTCAAATATTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCTATTAGCGGATTCCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTTCTTTTCTCTCTTTTCTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGACATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTCTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATAAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCACTCAATCTTTATTTAGAGTATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTATAAGCCTGAACG
CTCAAATATTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCTATTAGCGGATTCCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTTCTTTTCTCTCTTTTCTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGACATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTCTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATAAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEC/comE3 | Helicobacter pylori 26695 |
93.822 |
100 |
0.938 |