Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HU024_RS16445 Genome accession   NZ_CP059344
Coordinates   3362116..3362406 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain K01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3357116..3367406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU024_RS16430 (HU024_16430) - 3357337..3358662 (-) 1326 WP_087920785.1 G5 and 3D domain-containing protein -
  HU024_RS16435 (HU024_16435) - 3358797..3359564 (-) 768 WP_032872179.1 TatD family hydrolase -
  HU024_RS16440 (HU024_16440) metG 3359641..3361632 (-) 1992 WP_022552471.1 methionine--tRNA ligase -
  HU024_RS16445 (HU024_16445) abrB 3362116..3362406 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  HU024_RS16450 (HU024_16450) rsmI 3362456..3363337 (-) 882 WP_032872176.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HU024_RS16455 (HU024_16455) - 3363312..3363611 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  HU024_RS16460 (HU024_16460) - 3363598..3364341 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HU024_RS16465 (HU024_16465) yabA 3364402..3364761 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  HU024_RS16470 (HU024_16470) ricT 3364776..3365603 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  HU024_RS16475 (HU024_16475) holB 3365606..3366595 (-) 990 WP_032872173.1 DNA polymerase III subunit delta' -
  HU024_RS16480 (HU024_16480) - 3366607..3367047 (-) 441 WP_004264730.1 YaaR family protein -
  HU024_RS16485 (HU024_16485) darA 3367060..3367389 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=468899 HU024_RS16445 WP_169510469.1 3362116..3362406(+) (abrB) [Bacillus velezensis strain K01]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=468899 HU024_RS16445 WP_169510469.1 3362116..3362406(+) (abrB) [Bacillus velezensis strain K01]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979