Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPF32_RS05090 Genome accession   NC_017366
Coordinates   1059899..1060162 (+) Length   87 a.a.
NCBI ID   WP_001177712.1    Uniprot ID   A0AB33Z5Y9
Organism   Helicobacter pylori F32     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1054899..1065162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF32_RS05055 (HPF32_0985) tatA 1055077..1055316 (+) 240 WP_000508577.1 twin-arginine translocase TatA/TatE family subunit -
  HPF32_RS05060 (HPF32_0986) argS 1055319..1056944 (+) 1626 WP_000557186.1 arginine--tRNA ligase -
  HPF32_RS05065 (HPF32_0987) - 1057005..1057760 (+) 756 WP_000934599.1 HugZ family heme oxygenase -
  HPF32_RS05075 (HPF32_0988) - 1058236..1059024 (+) 789 WP_001140592.1 hypothetical protein -
  HPF32_RS05080 (HPF32_0989) - 1059128..1059607 (+) 480 WP_000571126.1 hypothetical protein -
  HPF32_RS05085 (HPF32_0990) comB2 1059604..1059888 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  HPF32_RS05090 (HPF32_0991) comB3 1059899..1060162 (+) 264 WP_001177712.1 hypothetical protein Machinery gene
  HPF32_RS05095 (HPF32_0992) - 1060173..1060409 (+) 237 WP_001183709.1 hypothetical protein -
  HPF32_RS05100 - 1060409..1062638 (+) 2230 Protein_986 VirB4 family type IV secretion/conjugal transfer ATPase -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10002.89 Da        Isoelectric Point: 5.7206

>NTDB_id=46877 HPF32_RS05090 WP_001177712.1 1059899..1060162(+) (comB3) [Helicobacter pylori F32]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILIAHSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=46877 HPF32_RS05090 WP_001177712.1 1059899..1060162(+) (comB3) [Helicobacter pylori F32]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCGCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

59.77

100

0.598

Multiple sequence alignment