Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPF32_RS05085 Genome accession   NC_017366
Coordinates   1059604..1059888 (+) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori F32     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1054604..1064888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF32_RS05055 (HPF32_0985) tatA 1055077..1055316 (+) 240 WP_000508577.1 twin-arginine translocase TatA/TatE family subunit -
  HPF32_RS05060 (HPF32_0986) argS 1055319..1056944 (+) 1626 WP_000557186.1 arginine--tRNA ligase -
  HPF32_RS05065 (HPF32_0987) - 1057005..1057760 (+) 756 WP_000934599.1 HugZ family heme oxygenase -
  HPF32_RS05075 (HPF32_0988) - 1058236..1059024 (+) 789 WP_001140592.1 hypothetical protein -
  HPF32_RS05080 (HPF32_0989) - 1059128..1059607 (+) 480 WP_000571126.1 hypothetical protein -
  HPF32_RS05085 (HPF32_0990) comB2 1059604..1059888 (+) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  HPF32_RS05090 (HPF32_0991) comB3 1059899..1060162 (+) 264 WP_001177712.1 hypothetical protein Machinery gene
  HPF32_RS05095 (HPF32_0992) - 1060173..1060409 (+) 237 WP_001183709.1 hypothetical protein -
  HPF32_RS05100 - 1060409..1062638 (+) 2230 Protein_986 VirB4 family type IV secretion/conjugal transfer ATPase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=46876 HPF32_RS05085 WP_000736478.1 1059604..1059888(+) (comB2) [Helicobacter pylori F32]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=46876 HPF32_RS05085 WP_000736478.1 1059604..1059888(+) (comB2) [Helicobacter pylori F32]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553

Multiple sequence alignment