Detailed information
Bioinformatically predicted
Overview
| Name | comEC/comE3 | Type | Machinery gene |
| Locus tag | HPF32_RS00230 | Genome accession | NC_017366 |
| Coordinates | 44605..45918 (+) | Length | 437 a.a. |
| NCBI ID | WP_000653636.1 | Uniprot ID | - |
| Organism | Helicobacter pylori F32 | ||
| Function | ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 39605..50918
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPF32_RS00210 (HPF32_0036) | crdR | 39922..40563 (+) | 642 | WP_001169802.1 | copper response regulator transcription factor CrdR | - |
| HPF32_RS00215 (HPF32_0037) | crdS | 40538..41731 (+) | 1194 | WP_000951936.1 | copper-sensing histidine kinase CrdS | - |
| HPF32_RS00220 (HPF32_0038) | - | 41734..43128 (+) | 1395 | WP_000954037.1 | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | - |
| HPF32_RS00225 (HPF32_0039) | - | 43142..44608 (+) | 1467 | WP_000349748.1 | replicative DNA helicase | - |
| HPF32_RS00230 (HPF32_0040) | comEC/comE3 | 44605..45918 (+) | 1314 | WP_000653636.1 | ComEC/Rec2 family competence protein | Machinery gene |
| HPF32_RS00235 (HPF32_0041) | mqnP | 45989..46831 (+) | 843 | WP_232501007.1 | menaquinone biosynthesis prenyltransferase MqnP | - |
| HPF32_RS00240 (HPF32_0042) | - | 46824..47318 (+) | 495 | WP_041202481.1 | hypothetical protein | - |
| HPF32_RS00245 (HPF32_0043) | - | 47331..47837 (+) | 507 | WP_000953105.1 | DUF6115 domain-containing protein | - |
| HPF32_RS00250 (HPF32_0044) | - | 47831..48634 (+) | 804 | WP_000226144.1 | phosphatidylserine decarboxylase | - |
| HPF32_RS00255 (HPF32_0045) | nadA | 48624..49634 (+) | 1011 | WP_001141824.1 | quinolinate synthase NadA | - |
| HPF32_RS00260 (HPF32_0047) | nadC | 49634..50455 (+) | 822 | WP_000404071.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 437 a.a. Molecular weight: 50088.01 Da Isoelectric Point: 9.9068
>NTDB_id=46867 HPF32_RS00230 WP_000653636.1 44605..45918(+) (comEC/comE3) [Helicobacter pylori F32]
MKDKTFQGAFELLTTPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLSAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLTRSLQAISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDRLLSMPLTIPTISVPSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG
MKDKTFQGAFELLTTPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLSAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLTRSLQAISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDRLLSMPLTIPTISVPSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG
Nucleotide
Download Length: 1314 bp
>NTDB_id=46867 HPF32_RS00230 WP_000653636.1 44605..45918(+) (comEC/comE3) [Helicobacter pylori F32]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCGACAAGCCTGAGCG
CTCAAATCCTATTGCAATACCCTAAAACGAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAAATCATGCTTTTTCCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTTAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTGGTGGGCAATTTGTATCGCGCGTTATTTATAGGAGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTGCTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTCAGAGCG
TTTCTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTAACGCGATCTCTTCAAGCCATAAGCTTAAGC
GCGTTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGCC
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCAGTTCCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTAAGTGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCGACAAGCCTGAGCG
CTCAAATCCTATTGCAATACCCTAAAACGAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAAATCATGCTTTTTCCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTTAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTGGTGGGCAATTTGTATCGCGCGTTATTTATAGGAGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTGCTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTCAGAGCG
TTTCTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTAACGCGATCTCTTCAAGCCATAAGCTTAAGC
GCGTTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGCC
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCAGTTCCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTAAGTGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEC/comE3 | Helicobacter pylori 26695 |
96.796 |
100 |
0.968 |