Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HPF30_RS06950 Genome accession   NC_017365
Coordinates   1423726..1424301 (-) Length   191 a.a.
NCBI ID   WP_001203660.1    Uniprot ID   -
Organism   Helicobacter pylori F30     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1418726..1429301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPF30_RS08550 (HPF30_1338) - 1420417..1420974 (-) 558 WP_000461525.1 restriction endonuclease subunit S -
  HPF30_RS08555 (HPF30_1339) - 1421001..1421657 (-) 657 WP_000580095.1 restriction endonuclease subunit S -
  HPF30_RS06945 (HPF30_1340) - 1421654..1423693 (-) 2040 WP_001147693.1 class I SAM-dependent DNA methyltransferase -
  HPF30_RS06950 (HPF30_1341) comFC 1423726..1424301 (-) 576 WP_001203660.1 ComF family protein Machinery gene
  HPF30_RS06955 (HPF30_1342) tmk 1424289..1424864 (-) 576 WP_000289731.1 dTMP kinase -
  HPF30_RS06960 (HPF30_1343) coaD 1424866..1425339 (-) 474 WP_001169262.1 pantetheine-phosphate adenylyltransferase -
  HPF30_RS06965 (HPF30_1344) - 1425339..1425902 (-) 564 WP_000780114.1 UbiX family flavin prenyltransferase -
  HPF30_RS06970 (HPF30_1345) flgA 1425912..1426568 (-) 657 WP_000697665.1 flagellar basal body P-ring formation chaperone FlgA -
  HPF30_RS06975 (HPF30_1346) uvrD 1426565..1428610 (-) 2046 WP_000345183.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21380.99 Da        Isoelectric Point: 9.4519

>NTDB_id=46861 HPF30_RS06950 WP_001203660.1 1423726..1424301(-) (comFC) [Helicobacter pylori F30]
MRCLTCLRLSFKPLCSNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNTKVHFAIALCSVDE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=46861 HPF30_RS06950 WP_001203660.1 1423726..1424301(-) (comFC) [Helicobacter pylori F30]
ATGCGTTGTTTAACTTGTTTGAGGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCTATTGATGATAAGATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAGGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGAAAAAGCCTGG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACACAAAAGTGCATTTTGCGATCGCGCTTTG
CAGCGTGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.241

100

0.942

Multiple sequence alignment