Detailed information NTG0046860

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPF30_RS06510
• Genome accession: NC_017365
• Coordinates: 1337798..1338853 (-)
• Length: 351 a.a.
• NCBI ID: WP_000786706.1
• Uniprot ID: -
• Organism: Helicobacter pylori F30
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1332798..1343853

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPF30_RS06485 (HPF30_1256)	-	1333348..1334760 (-)	1413	WP_000694847.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPF30_RS06490 (HPF30_1257)	comB10	1334826..1335962 (-)	1137	WP_001045737.1	DNA type IV secretion system protein ComB10	Machinery gene
HPF30_RS06495 (HPF30_1258)	comB9	1335955..1336917 (-)	963	WP_014535278.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPF30_RS06500 (HPF30_1259)	comB8	1336917..1337660 (-)	744	WP_000660530.1	type IV secretion system protein	Machinery gene
HPF30_RS06505	comB7	1337657..1337782 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
HPF30_RS06510 (HPF30_1260)	comB6	1337798..1338853 (-)	1056	WP_000786706.1	P-type conjugative transfer protein TrbL	Machinery gene
HPF30_RS06515 (HPF30_1261)	-	1338861..1339856 (-)	996	WP_000468803.1	PDZ domain-containing protein	-
HPF30_RS06520 (HPF30_1262)	-	1339856..1340149 (-)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
HPF30_RS06525 (HPF30_1263)	panD	1340160..1340510 (-)	351	WP_000142206.1	aspartate 1-decarboxylase	-
HPF30_RS06530 (HPF30_1264)	-	1340500..1342722 (-)	2223	WP_001051535.1	AAA family ATPase	-
HPF30_RS06535 (HPF30_1265)	-	1342722..1342997 (-)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
HPF30_RS06540 (HPF30_1266)	-	1343017..1343430 (-)	414	WP_001023000.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39815.79 Da
• Isoelectric Point: 8.8165

>NTDB_id=46860 HPF30_RS06510 WP_000786706.1 1337798..1338853(-) (comB6) [Helicobacter pylori F30]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHTLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISASTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=46860 HPF30_RS06510 WP_000786706.1 1337798..1338853(-) (comB6) [Helicobacter pylori F30]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGTGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACACAAAGTCT
CTCTCAAAGCTTGAGCAATTTTTCTAACCACACGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTGCTTCTACAAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963