Detailed information NTG0468562

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6J96_RS10780
• Genome accession: NZ_CP069589
• Coordinates: 2146428..2147420 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1266
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2141428..2152420

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J96_RS10760 (I6J96_10760)	ygbM	2142066..2142842 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
I6J96_RS10765 (I6J96_10765)	ygbN	2142931..2144295 (+)	1365	WP_000104433.1	GntP family transporter	-
I6J96_RS10770 (I6J96_10770)	-	2144438..2145481 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
I6J96_RS10775 (I6J96_10775)	-	2145706..2146257 (+)	552	WP_001179444.1	flavodoxin family protein	-
I6J96_RS10780 (I6J96_10780)	rpoS	2146428..2147420 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6J96_RS10785 (I6J96_10785)	nlpD	2147483..2148577 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
I6J96_RS10790 (I6J96_10790)	pcm	2148762..2149388 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I6J96_RS10795 (I6J96_10795)	surE	2149382..2150143 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6J96_RS10800 (I6J96_10800)	truD	2150124..2151173 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
I6J96_RS10805 (I6J96_10805)	ispF	2151170..2151649 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6J96_RS10810 (I6J96_10810)	ispD	2151649..2152359 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=468562 I6J96_RS10780 WP_000081550.1 2146428..2147420(-) (rpoS) [Escherichia coli strain FDAARGOS_1266]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=468562 I6J96_RS10780 WP_000081550.1 2146428..2147420(-) (rpoS) [Escherichia coli strain FDAARGOS_1266]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715