Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HZT45_RS10365 Genome accession   NZ_CP059318
Coordinates   2166319..2166927 (+) Length   202 a.a.
NCBI ID   WP_007409489.1    Uniprot ID   -
Organism   Bacillus velezensis strain BIOMA BV10     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2161319..2171927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT45_RS10325 (HZT45_10325) - 2162372..2162878 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  HZT45_RS10330 (HZT45_10330) - 2163017..2163430 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  HZT45_RS10335 (HZT45_10335) - 2163460..2163894 (-) 435 WP_052827587.1 YppG family protein -
  HZT45_RS10340 (HZT45_10340) - 2164081..2164263 (+) 183 WP_003153532.1 YppF family protein -
  HZT45_RS10345 (HZT45_10345) - 2164302..2164670 (-) 369 WP_181467458.1 YppE family protein -
  HZT45_RS10350 (HZT45_10350) - 2164716..2164961 (-) 246 WP_014418233.1 DUF5446 family protein -
  HZT45_RS10355 (HZT45_10355) sspM 2165167..2165271 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  HZT45_RS10360 (HZT45_10360) - 2165315..2166277 (-) 963 WP_014305287.1 DUF2515 domain-containing protein -
  HZT45_RS10365 (HZT45_10365) recU 2166319..2166927 (+) 609 WP_007409489.1 Holliday junction resolvase RecU Machinery gene
  HZT45_RS10370 (HZT45_10370) - 2166966..2169749 (+) 2784 WP_052827589.1 PBP1A family penicillin-binding protein -
  HZT45_RS10375 (HZT45_10375) - 2169827..2170318 (-) 492 WP_052827590.1 YpoC family protein -
  HZT45_RS10380 (HZT45_10380) nth 2170315..2170974 (-) 660 WP_007612187.1 endonuclease III -
  HZT45_RS10385 (HZT45_10385) dnaD 2170993..2171691 (-) 699 WP_052827591.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23694.81 Da        Isoelectric Point: 9.5778

>NTDB_id=468522 HZT45_RS10365 WP_007409489.1 2166319..2166927(+) (recU) [Bacillus velezensis strain BIOMA BV10]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLVNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=468522 HZT45_RS10365 WP_007409489.1 2166319..2166927(+) (recU) [Bacillus velezensis strain BIOMA BV10]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGTTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCACGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891