Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HZT45_RS07195 Genome accession   NZ_CP059318
Coordinates   1390197..1390481 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain BIOMA BV10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1385197..1395481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT45_RS07175 (HZT45_07175) - 1386440..1387348 (+) 909 WP_052827379.1 ketopantoate reductase family protein -
  HZT45_RS07180 (HZT45_07180) - 1387380..1388612 (-) 1233 WP_052827380.1 aminopeptidase -
  HZT45_RS07185 (HZT45_07185) - 1388713..1388847 (-) 135 WP_151298060.1 protein YkpC -
  HZT45_RS07190 (HZT45_07190) mreBH 1388919..1389926 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  HZT45_RS07195 (HZT45_07195) abrB 1390197..1390481 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  HZT45_RS07200 (HZT45_07200) - 1390654..1391958 (+) 1305 WP_007409646.1 ATP-binding protein -
  HZT45_RS07205 (HZT45_07205) - 1391960..1392787 (+) 828 WP_038463814.1 gamma-glutamylcyclotransferase -
  HZT45_RS07210 (HZT45_07210) ktrC 1392828..1393493 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  HZT45_RS07215 (HZT45_07215) ade 1393642..1395375 (+) 1734 WP_038457873.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=468517 HZT45_RS07195 WP_003154557.1 1390197..1390481(+) (abrB) [Bacillus velezensis strain BIOMA BV10]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=468517 HZT45_RS07195 WP_003154557.1 1390197..1390481(+) (abrB) [Bacillus velezensis strain BIOMA BV10]
ATGAAATCGATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543