Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   HZT45_RS01750 Genome accession   NZ_CP059318
Coordinates   335343..335780 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain BIOMA BV10     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 330343..340780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT45_RS01725 (HZT45_01725) - 331361..332497 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  HZT45_RS01730 (HZT45_01730) - 332512..332946 (+) 435 WP_012116767.1 RDD family protein -
  HZT45_RS01735 (HZT45_01735) - 333065..333343 (+) 279 WP_372675491.1 YckD family protein -
  HZT45_RS01740 (HZT45_01740) - 333447..334883 (+) 1437 WP_181467506.1 glycoside hydrolase family 1 protein -
  HZT45_RS01745 (HZT45_01745) nin/comJ 334924..335322 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  HZT45_RS01750 (HZT45_01750) nucA/comI 335343..335780 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  HZT45_RS01755 (HZT45_01755) hxlB 336139..336696 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  HZT45_RS01760 (HZT45_01760) hxlA 336693..337328 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  HZT45_RS01765 (HZT45_01765) - 337560..337922 (+) 363 WP_012116770.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=468494 HZT45_RS01750 WP_003156588.1 335343..335780(-) (nucA/comI) [Bacillus velezensis strain BIOMA BV10]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=468494 HZT45_RS01750 WP_003156588.1 335343..335780(-) (nucA/comI) [Bacillus velezensis strain BIOMA BV10]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641