Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HZT45_RS00230 Genome accession   NZ_CP059318
Coordinates   45600..45890 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain BIOMA BV10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40600..50890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT45_RS00190 (HZT45_00190) darA 40617..40946 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  HZT45_RS00195 (HZT45_00195) - 40959..41399 (+) 441 WP_052826958.1 YaaR family protein -
  HZT45_RS00200 (HZT45_00200) holB 41411..42400 (+) 990 WP_052826959.1 DNA polymerase III subunit delta' -
  HZT45_RS00205 (HZT45_00205) ricT 42403..43230 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  HZT45_RS00210 (HZT45_00210) yabA 43245..43604 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  HZT45_RS00215 (HZT45_00215) - 43665..44408 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HZT45_RS00220 (HZT45_00220) - 44395..44694 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  HZT45_RS00225 (HZT45_00225) rsmI 44669..45550 (+) 882 WP_052826960.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HZT45_RS00230 (HZT45_00230) abrB 45600..45890 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  HZT45_RS00235 (HZT45_00235) metG 46374..48365 (+) 1992 WP_011996169.1 methionine--tRNA ligase -
  HZT45_RS00240 (HZT45_00240) - 48441..49208 (+) 768 WP_052826961.1 TatD family hydrolase -
  HZT45_RS00245 (HZT45_00245) - 49343..50668 (+) 1326 WP_151298033.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=468489 HZT45_RS00230 WP_169510469.1 45600..45890(-) (abrB) [Bacillus velezensis strain BIOMA BV10]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=468489 HZT45_RS00230 WP_169510469.1 45600..45890(-) (abrB) [Bacillus velezensis strain BIOMA BV10]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979