Detailed information NTG0468415

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6J80_RS10915
• Genome accession: NZ_CP069571
• Coordinates: 2178563..2179555 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1250
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2173563..2184555

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J80_RS10885 (I6J80_10885)	ispD	2173624..2174334 (+)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6J80_RS10890 (I6J80_10890)	ispF	2174334..2174813 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6J80_RS10895 (I6J80_10895)	truD	2174810..2175859 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
I6J80_RS10900 (I6J80_10900)	surE	2175840..2176601 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6J80_RS10905 (I6J80_10905)	pcm	2176595..2177221 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I6J80_RS10910 (I6J80_10910)	nlpD	2177406..2178500 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
I6J80_RS10915 (I6J80_10915)	rpoS	2178563..2179555 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6J80_RS10920 (I6J80_10920)	ygbN	2179649..2181013 (-)	1365	WP_000104459.1	GntP family transporter	-
I6J80_RS10925 (I6J80_10925)	ygbM	2181102..2181878 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
I6J80_RS10930 (I6J80_10930)	ygbL	2181883..2182521 (-)	639	WP_001278994.1	aldolase	-
I6J80_RS10935 (I6J80_10935)	otnK	2182518..2183780 (-)	1263	WP_000590386.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=468415 I6J80_RS10915 WP_000081550.1 2178563..2179555(+) (rpoS) [Escherichia coli strain FDAARGOS_1250]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=468415 I6J80_RS10915 WP_000081550.1 2178563..2179555(+) (rpoS) [Escherichia coli strain FDAARGOS_1250]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715