Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPLT_RS06630 Genome accession   NC_017362
Coordinates   1351231..1352544 (-) Length   437 a.a.
NCBI ID   WP_000653634.1    Uniprot ID   -
Organism   Helicobacter pylori Lithuania75     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1346231..1357544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPLT_RS06600 (HPLT_06800) nadC 1346697..1347518 (-) 822 WP_000405982.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPLT_RS06605 nadA 1347518..1348527 (-) 1010 Protein_1260 quinolinate synthase NadA -
  HPLT_RS06610 (HPLT_06815) - 1348517..1349320 (-) 804 WP_000228059.1 phosphatidylserine decarboxylase -
  HPLT_RS06615 (HPLT_06820) - 1349314..1349820 (-) 507 WP_000953098.1 DUF6115 domain-containing protein -
  HPLT_RS06620 (HPLT_06825) - 1349833..1350327 (-) 495 WP_014535081.1 hypothetical protein -
  HPLT_RS06625 (HPLT_06830) mqnP 1350320..1351204 (-) 885 WP_000913928.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPLT_RS06630 (HPLT_06835) comEC/comE3 1351231..1352544 (-) 1314 WP_000653634.1 ComEC/Rec2 family competence protein Machinery gene
  HPLT_RS06635 (HPLT_06840) - 1352541..1354007 (-) 1467 WP_000349746.1 replicative DNA helicase -
  HPLT_RS06640 (HPLT_06845) - 1354018..1355412 (-) 1395 WP_000953996.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPLT_RS06645 (HPLT_06850) crdS 1355415..1356617 (-) 1203 WP_080006030.1 copper-sensing histidine kinase CrdS -
  HPLT_RS06650 (HPLT_06855) crdR 1356583..1357224 (-) 642 WP_001169791.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50307.33 Da        Isoelectric Point: 9.8538

>NTDB_id=46837 HPLT_RS06630 WP_000653634.1 1351231..1352544(-) (comEC/comE3) [Helicobacter pylori Lithuania75]
MKDKTFQGAFELLTTPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFSKPTNLNAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTTIKEPLKNLQYRHAQFFGKFKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDRILSMPLTIPTISIPSPLWLLGVHLCLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=46837 HPLT_RS06630 WP_000653634.1 1351231..1352544(-) (comEC/comE3) [Helicobacter pylori Lithuania75]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCGATCAACCTCTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAACTTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAAAACATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGTAAGTTCAAACCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTGTTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGCA
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATGTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

96.568

100

0.966

Multiple sequence alignment