Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H0155_RS14105 Genome accession   NZ_CP059283
Coordinates   2861992..2862621 (-) Length   209 a.a.
NCBI ID   WP_094337273.1    Uniprot ID   -
Organism   Escherichia coli strain SY3626_hybrid     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2856992..2867621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0155_RS14090 (H0155_14090) helD 2857234..2859288 (-) 2055 WP_000420536.1 DNA helicase IV -
  H0155_RS14095 (H0155_14095) yccF 2859411..2859857 (+) 447 WP_001261235.1 YccF domain-containing protein -
  H0155_RS14100 (H0155_14100) yccS 2859867..2862029 (+) 2163 WP_000875045.1 YccS family putative transporter -
  H0155_RS14105 (H0155_14105) sxy/tfoX 2861992..2862621 (-) 630 WP_094337273.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H0155_RS14110 (H0155_14110) sulA 2862840..2863349 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H0155_RS14115 (H0155_14115) ompA 2863706..2864758 (+) 1053 WP_032223517.1 porin OmpA -
  H0155_RS14120 (H0155_14120) matP 2864833..2865285 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  H0155_RS14125 (H0155_14125) ycbZ 2865471..2867231 (+) 1761 WP_053900898.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.01 Da        Isoelectric Point: 9.2180

>NTDB_id=468287 H0155_RS14105 WP_094337273.1 2861992..2862621(-) (sxy/tfoX) [Escherichia coli strain SY3626_hybrid]
MKSLSYKRIYKSQEYLSTLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=468287 H0155_RS14105 WP_094337273.1 2861992..2862621(-) (sxy/tfoX) [Escherichia coli strain SY3626_hybrid]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGTCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995