Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6J89_RS10740 Genome accession   NZ_CP069559
Coordinates   2287450..2288877 (-) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1259     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2282450..2293877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J89_RS10705 (I6J89_10705) hisL 2283034..2283084 (-) 51 WP_001364200.1 his operon leader peptide -
  I6J89_RS10710 (I6J89_10710) yefM 2283367..2283618 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  I6J89_RS10715 (I6J89_10715) yoeB 2283615..2283869 (+) 255 WP_000767828.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  I6J89_RS10720 (I6J89_10720) yeeZ 2283952..2284776 (+) 825 WP_000754740.1 SDR family oxidoreductase -
  I6J89_RS10725 (I6J89_10725) yeeY 2284822..2285751 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  I6J89_RS10730 (I6J89_10730) yoeI 2285966..2286028 (+) 63 WP_010723108.1 membrane protein YoeI -
  I6J89_RS10735 (I6J89_10735) plaP 2286018..2287376 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6J89_RS10740 (I6J89_10740) sbcB 2287450..2288877 (-) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  I6J89_RS10745 (I6J89_10745) dacD 2289086..2290252 (+) 1167 WP_045233214.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6J89_RS10750 (I6J89_10750) sbmC 2290371..2290844 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  I6J89_RS10755 (I6J89_10755) yeeA 2291042..2292100 (+) 1059 WP_001200890.1 FUSC family protein -
  I6J89_RS10760 (I6J89_10760) tmaR 2292271..2292600 (+) 330 WP_000450409.1 DUF496 family protein -
  I6J89_RS10765 (I6J89_10765) - 2292701..2293144 (-) 444 WP_021513692.1 EutP/PduV family microcompartment system protein -
  I6J89_RS10770 (I6J89_10770) pduU 2293149..2293499 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=468246 I6J89_RS10740 WP_000980557.1 2287450..2288877(-) (sbcB) [Escherichia coli strain FDAARGOS_1259]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=468246 I6J89_RS10740 WP_000980557.1 2287450..2288877(-) (sbcB) [Escherichia coli strain FDAARGOS_1259]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583