Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HPLT_RS00100 | Genome accession | NC_017362 |
| Coordinates | 14125..14388 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584973.1 | Uniprot ID | G2MDJ4 |
| Organism | Helicobacter pylori Lithuania75 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 9125..19388
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPLT_RS00075 (HPLT_00050) | groES | 9408..9764 (-) | 357 | WP_000671948.1 | co-chaperone GroES | - |
| HPLT_RS00080 (HPLT_00055) | dnaG | 10053..11732 (+) | 1680 | WP_000601607.1 | DNA primase | - |
| HPLT_RS00085 (HPLT_00060) | - | 11729..12781 (+) | 1053 | WP_000809465.1 | MnmA/TRMU family protein | - |
| HPLT_RS00090 (HPLT_00065) | - | 12870..13697 (+) | 828 | WP_001154877.1 | DUF5718 family protein | - |
| HPLT_RS00095 (HPLT_00070) | comB2 | 13844..14125 (+) | 282 | WP_001272690.1 | TrbC/VirB2 family protein | Machinery gene |
| HPLT_RS00100 (HPLT_00075) | comB3 | 14125..14388 (+) | 264 | WP_000584973.1 | hypothetical protein | Machinery gene |
| HPLT_RS00105 (HPLT_00080) | comB4 | 14390..16753 (+) | 2364 | WP_000890501.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HPLT_RS00110 (HPLT_00085) | - | 17055..18395 (+) | 1341 | WP_014534905.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10034.13 Da Isoelectric Point: 9.5290
>NTDB_id=46824 HPLT_RS00100 WP_000584973.1 14125..14388(+) (comB3) [Helicobacter pylori Lithuania75]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=46824 HPLT_RS00100 WP_000584973.1 14125..14388(+) (comB3) [Helicobacter pylori Lithuania75]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCAGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCAGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
98.851 |
100 |
0.989 |