Detailed information NTG0468233

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6J89_RS07470
• Genome accession: NZ_CP069559
• Coordinates: 1571731..1572723 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1259
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1566731..1577723

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J89_RS07440 (I6J89_07440)	ispD	1566792..1567502 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6J89_RS07445 (I6J89_07445)	ispF	1567502..1567981 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6J89_RS07450 (I6J89_07450)	truD	1567978..1569027 (+)	1050	WP_000568959.1	tRNA pseudouridine(13) synthase TruD	-
I6J89_RS07455 (I6J89_07455)	surE	1569008..1569769 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6J89_RS07460 (I6J89_07460)	pcm	1569763..1570389 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I6J89_RS07465 (I6J89_07465)	nlpD	1570574..1571668 (+)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
I6J89_RS07470 (I6J89_07470)	rpoS	1571731..1572723 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6J89_RS07475 (I6J89_07475)	-	1572901..1573452 (-)	552	WP_001179442.1	flavodoxin family protein	-
I6J89_RS07480 (I6J89_07480)	-	1573677..1574720 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
I6J89_RS07485 (I6J89_07485)	ygbN	1574863..1576227 (-)	1365	WP_000104433.1	GntP family transporter	-
I6J89_RS07490 (I6J89_07490)	ygbM	1576316..1577092 (-)	777	WP_001136928.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=468233 I6J89_RS07470 WP_000081550.1 1571731..1572723(+) (rpoS) [Escherichia coli strain FDAARGOS_1259]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=468233 I6J89_RS07470 WP_000081550.1 1571731..1572723(+) (rpoS) [Escherichia coli strain FDAARGOS_1259]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGCCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGATCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715