Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPLT_RS00095 Genome accession   NC_017362
Coordinates   13844..14125 (+) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori Lithuania75     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8844..19125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPLT_RS00075 (HPLT_00050) groES 9408..9764 (-) 357 WP_000671948.1 co-chaperone GroES -
  HPLT_RS00080 (HPLT_00055) dnaG 10053..11732 (+) 1680 WP_000601607.1 DNA primase -
  HPLT_RS00085 (HPLT_00060) - 11729..12781 (+) 1053 WP_000809465.1 MnmA/TRMU family protein -
  HPLT_RS00090 (HPLT_00065) - 12870..13697 (+) 828 WP_001154877.1 DUF5718 family protein -
  HPLT_RS00095 (HPLT_00070) comB2 13844..14125 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HPLT_RS00100 (HPLT_00075) comB3 14125..14388 (+) 264 WP_000584973.1 hypothetical protein Machinery gene
  HPLT_RS00105 (HPLT_00080) comB4 14390..16753 (+) 2364 WP_000890501.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPLT_RS00110 (HPLT_00085) - 17055..18395 (+) 1341 WP_014534905.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=46823 HPLT_RS00095 WP_001272690.1 13844..14125(+) (comB2) [Helicobacter pylori Lithuania75]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=46823 HPLT_RS00095 WP_001272690.1 13844..14125(+) (comB2) [Helicobacter pylori Lithuania75]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGCTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment