Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6J38_RS09970 Genome accession   NZ_CP069558
Coordinates   1972547..1973149 (-) Length   200 a.a.
NCBI ID   WP_003070265.1    Uniprot ID   F9P4E8
Organism   Streptococcus constellatus strain FDAARGOS_1208     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1967547..1978149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J38_RS09955 (I6J38_09955) nadE 1967890..1968714 (+) 825 WP_020997623.1 ammonia-dependent NAD(+) synthetase -
  I6J38_RS09960 (I6J38_09960) pepC 1968862..1970199 (+) 1338 WP_006267160.1 aminopeptidase C -
  I6J38_RS09965 (I6J38_09965) pbp1a 1970389..1972554 (-) 2166 WP_006267093.1 penicillin-binding protein PBP1A -
  I6J38_RS09970 (I6J38_09970) recU 1972547..1973149 (-) 603 WP_003070265.1 Holliday junction resolvase RecU Machinery gene
  I6J38_RS09975 (I6J38_09975) - 1973219..1973746 (+) 528 WP_003070263.1 DUF1273 domain-containing protein -
  I6J38_RS09980 (I6J38_09980) gpsB 1973816..1974157 (+) 342 WP_006267358.1 cell division regulator GpsB -
  I6J38_RS09990 (I6J38_09990) - 1974591..1975745 (+) 1155 WP_006267660.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  I6J38_RS09995 (I6J38_09995) - 1975758..1977239 (+) 1482 WP_006267090.1 cell division site-positioning protein MapZ family protein -
  I6J38_RS10000 (I6J38_10000) ahpC 1977344..1977910 (+) 567 WP_003070257.1 alkyl hydroperoxide reductase subunit C -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23079.71 Da        Isoelectric Point: 10.0507

>NTDB_id=468191 I6J38_RS09970 WP_003070265.1 1972547..1973149(-) (recU) [Streptococcus constellatus strain FDAARGOS_1208]
MVNYPHKVSSRNSLKFPKKKSVDFANRGMSFEKMINETNDYYLSHGLAVIHKKPTPIQIVKVDYPRRSRAKIVEAYFRQA
STTDYSGVYQGRYIDFEAKETRQKASMPMKNFHAHQIEHMEQVVKQGGICFVLLHFSALKLTYLLPAPYLINFFKIDKGT
KSMPLDYIQQHGYSISQNGLPSIPYLEIIQQNLLGGKINE

Nucleotide


Download         Length: 603 bp        

>NTDB_id=468191 I6J38_RS09970 WP_003070265.1 1972547..1973149(-) (recU) [Streptococcus constellatus strain FDAARGOS_1208]
ATGGTCAACTATCCACATAAAGTTTCCTCGCGCAACTCATTGAAATTTCCTAAAAAGAAATCAGTTGATTTTGCCAATCG
AGGAATGTCTTTTGAAAAAATGATCAATGAAACAAATGATTATTATCTTAGTCATGGGTTGGCGGTCATTCACAAAAAAC
CGACACCTATTCAAATCGTAAAAGTGGATTATCCTAGGCGTAGTCGGGCAAAAATTGTAGAAGCCTACTTTCGACAAGCC
TCTACAACAGACTATTCTGGTGTCTACCAGGGGCGTTACATAGATTTTGAAGCAAAAGAAACTCGTCAAAAGGCTTCTAT
GCCTATGAAAAATTTTCATGCGCATCAAATCGAACACATGGAACAAGTCGTCAAACAAGGAGGAATTTGTTTCGTTTTAT
TGCACTTTTCAGCCTTAAAACTGACGTATTTGCTTCCTGCTCCTTATCTGATTAACTTCTTCAAGATTGACAAAGGGACA
AAATCCATGCCACTTGATTACATTCAACAACATGGATATTCTATTTCACAGAATGGACTTCCTAGCATTCCGTATCTTGA
AATCATTCAACAAAACTTACTAGGTGGTAAAATAAATGAATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P4E8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

52.239

100

0.525