Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HZY77_RS08380 Genome accession   NZ_CP059257
Coordinates   1698319..1699752 (+) Length   477 a.a.
NCBI ID   WP_296634501.1    Uniprot ID   -
Organism   MAG: Thiobacillus sp. isolate SSC5     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1693319..1704752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZY77_RS08355 (HZY77_08330) - 1694851..1695837 (+) 987 WP_296820604.1 KpsF/GutQ family sugar-phosphate isomerase -
  HZY77_RS08360 (HZY77_08335) - 1695837..1696364 (+) 528 WP_296820607.1 HAD-IIIA family hydrolase -
  HZY77_RS08365 (HZY77_08340) lptC 1696411..1696986 (+) 576 WP_296634506.1 LPS export ABC transporter periplasmic protein LptC -
  HZY77_RS08370 (HZY77_08345) lptA 1696991..1697527 (+) 537 WP_296820610.1 lipopolysaccharide transport periplasmic protein LptA -
  HZY77_RS08375 (HZY77_08350) lptB 1697524..1698246 (+) 723 WP_296634503.1 LPS export ABC transporter ATP-binding protein -
  HZY77_RS08380 (HZY77_08355) rpoN/rpoN1 1698319..1699752 (+) 1434 WP_296634501.1 RNA polymerase factor sigma-54 Machinery gene
  HZY77_RS08385 (HZY77_08360) raiA 1699910..1700245 (+) 336 WP_296820612.1 ribosome-associated translation inhibitor RaiA -
  HZY77_RS08390 (HZY77_08365) - 1700337..1700792 (+) 456 WP_296820614.1 PTS sugar transporter subunit IIA -
  HZY77_RS08395 (HZY77_08370) hprK 1700809..1701762 (+) 954 WP_296634497.1 HPr(Ser) kinase/phosphatase -
  HZY77_RS08400 (HZY77_08375) rapZ 1701763..1702599 (+) 837 WP_296820618.1 RNase adapter RapZ -
  HZY77_RS08405 (HZY77_08380) - 1702599..1702964 (+) 366 WP_296660692.1 NusG domain II-containing protein -
  HZY77_RS08410 (HZY77_08385) - 1702945..1703508 (+) 564 WP_296820620.1 Gx transporter family protein -
  HZY77_RS08415 (HZY77_08390) - 1703636..1704253 (+) 618 WP_296634489.1 flavin prenyltransferase UbiX -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 52806.79 Da        Isoelectric Point: 4.8286

>NTDB_id=468173 HZY77_RS08380 WP_296634501.1 1698319..1699752(+) (rpoN/rpoN1) [MAG: Thiobacillus sp. isolate SSC5]
MKHSLQLKLGQHLTLTPQLQQSIRLLQLSTLELNQELEQMLQDNPLLEREEEDEASYATAEAPAHTAEAEAQSTETALPD
HTDSEPVTALDDSDWNDYSVASGDDEDNDYTQGSISGATLREHLLNQLIVSPLTLRDRTLVAALIDDLDDSGFLTQPLED
ITASLQAELEELEPEELETALKHLQNMDPTGVGARNLAECLTLQLRALPPDTPARDAAMRLTAHYLDLLAARDVGKLKKM
LGIDDATLRAARALILSLNPRPGAAFGADDTHYVIPDVYVRKVKGMWIASLNADAMPKLRVNRVYADILARHRESGGSQL
ASQLQEARWLIKNVQQRFDTILRVSQAIVDRQKQFFEHGEVAMRPLVLREIADAVELHESTISRVTTQKYMMTPRGLYEL
KYFFGSHVSTDSGGACSSTAIRALIKQLVAAESAKKPLSDGQLAEVLGQQGIVVARRTVAKYRESLQIPPANMRRAL

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=468173 HZY77_RS08380 WP_296634501.1 1698319..1699752(+) (rpoN/rpoN1) [MAG: Thiobacillus sp. isolate SSC5]
ATGAAACACAGCCTTCAACTCAAGCTCGGTCAACACCTCACGCTGACGCCCCAACTGCAACAGTCGATCCGACTGCTGCA
GCTGTCGACGCTGGAACTGAATCAGGAACTGGAGCAGATGCTGCAGGACAATCCCCTGCTGGAACGCGAGGAAGAGGACG
AAGCCAGCTATGCGACAGCGGAGGCGCCCGCACATACAGCCGAGGCCGAGGCGCAAAGCACGGAAACGGCATTGCCCGAC
CATACCGACTCGGAACCTGTCACTGCACTGGATGACTCCGACTGGAACGACTACAGCGTGGCCAGCGGCGATGACGAGGA
CAACGATTACACCCAGGGTTCGATATCGGGCGCGACCTTGCGCGAGCATCTGCTGAACCAGTTGATCGTCAGTCCGCTCA
CCCTGCGCGACCGCACCCTGGTCGCCGCGCTGATCGACGACCTGGACGATTCGGGTTTCCTGACCCAGCCGCTGGAAGAC
ATCACCGCGAGCCTCCAGGCCGAACTCGAGGAGCTCGAACCCGAGGAACTCGAAACCGCGCTCAAGCATCTGCAGAACAT
GGACCCGACCGGCGTCGGCGCACGCAACCTGGCCGAATGCCTGACCCTGCAACTGCGCGCACTGCCGCCGGACACGCCCG
CGCGCGACGCCGCCATGCGGCTCACCGCACACTATCTGGATTTGCTCGCCGCACGCGATGTGGGCAAGCTGAAGAAAATG
CTCGGCATCGACGACGCCACGCTGCGCGCCGCACGTGCCCTGATCCTGTCCCTGAACCCGCGTCCGGGCGCCGCTTTCGG
CGCCGACGACACGCACTACGTGATTCCCGACGTCTACGTGCGCAAGGTCAAGGGCATGTGGATCGCCAGCCTCAACGCCG
ACGCCATGCCCAAGCTGCGCGTCAACCGCGTCTATGCCGACATCCTGGCACGCCACCGCGAAAGCGGCGGCAGCCAGCTT
GCCAGCCAGCTGCAGGAAGCCCGCTGGCTGATCAAGAACGTGCAGCAACGTTTCGACACCATCCTGCGCGTCTCGCAGGC
CATCGTCGACCGCCAGAAGCAATTCTTCGAACATGGCGAGGTGGCGATGCGCCCGTTGGTACTGCGCGAAATCGCCGATG
CAGTGGAGCTGCACGAATCGACCATTTCGCGCGTGACTACGCAAAAATACATGATGACGCCGCGCGGCTTGTACGAGCTG
AAGTATTTCTTCGGCAGCCACGTCTCGACCGACAGCGGCGGCGCCTGTTCCTCGACCGCCATTCGTGCCCTCATCAAGCA
GCTGGTTGCTGCCGAAAGCGCCAAGAAACCGCTGTCGGATGGCCAATTGGCGGAAGTTCTGGGCCAGCAGGGTATCGTGG
TAGCCCGCCGCACGGTCGCCAAGTATCGCGAGTCGCTGCAAATCCCACCCGCCAACATGCGCCGCGCACTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(115-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

55.842

100

0.591