Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HZY77_RS05780 Genome accession   NZ_CP059257
Coordinates   1164383..1165738 (-) Length   451 a.a.
NCBI ID   WP_296819657.1    Uniprot ID   A0A7L5YD07
Organism   MAG: Thiobacillus sp. isolate SSC5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1159383..1170738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZY77_RS05770 (HZY77_05780) - 1160651..1162282 (+) 1632 WP_296819655.1 peptide chain release factor 3 -
  HZY77_RS05775 (HZY77_05785) - 1162312..1164303 (-) 1992 WP_296819656.1 ferrous iron transporter B -
  HZY77_RS05780 (HZY77_05790) radA 1164383..1165738 (-) 1356 WP_296819657.1 DNA repair protein RadA Machinery gene
  HZY77_RS05790 (HZY77_05800) cysM 1165883..1166776 (-) 894 WP_296819660.1 cysteine synthase CysM -
  HZY77_RS05795 (HZY77_05805) rfaD 1166773..1167771 (-) 999 WP_296635828.1 ADP-glyceromanno-heptose 6-epimerase -
  HZY77_RS05800 (HZY77_05810) rfaE1 1167768..1168703 (-) 936 WP_296819663.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  HZY77_RS05805 (HZY77_05815) - 1168716..1170038 (-) 1323 WP_296819666.1 UDP-glucose/GDP-mannose dehydrogenase family protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 47897.98 Da        Isoelectric Point: 7.4413

>NTDB_id=468170 HZY77_RS05780 WP_296819657.1 1164383..1165738(-) (radA) [MAG: Thiobacillus sp. isolate SSC5]
MAKAKTIYTCTECGGQSPKWQGQCXHCNAWNTLVETIAESAKPRFAALAATSTVQLLHDVEASEESRIATDIGELDRVLG
GGLVPGGVVLIGGDPGIGKSTLLLQALAGLSGNLKTLYVSGEESARQVALRARRLSLPETTFPVLPEIRLEAILAQLAEL
KPEVAVIDSIQTVYSESLTSAPGSVAQVRECAAQLTRHAKQTGTAIILVGHVTKEGAIAGPRVLEHIVDTVLYFEGDTGS
SFRLVRAFKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSRHGEPVPGSCVLVTQEGTRPLLVEIQALVDSSHAPSPRRL
SVGLEQNRLAMLLAVLHRHAGIACFDQDVFVNAVGGVKISEPAADLAVLAAIVSSLRSQPLPDKLVMFGEVGLAGEIRPV
QRGQERLKEAAKLGFTQAIVPAANQPKQKIAGMTVHAVQRLDEAIRLFRES

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=468170 HZY77_RS05780 WP_296819657.1 1164383..1165738(-) (radA) [MAG: Thiobacillus sp. isolate SSC5]
ATGGCCAAAGCCAAGACGATCTACACTTGCACCGAATGCGGCGGACAGTCGCCCAAGTGGCAGGGTCAGTGCNCCCACTG
CAACGCCTGGAATACCCTGGTCGAGACCATCGCCGAATCAGCGAAACCGCGTTTCGCCGCGTTGGCGGCGACCAGCACCG
TGCAACTGCTGCATGACGTCGAGGCCTCCGAGGAAAGCCGCATCGCCACCGACATCGGCGAACTCGACCGCGTGCTTGGC
GGAGGCCTGGTGCCGGGCGGGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCGACGCTGCTGTTGCAAGCCCT
GGCCGGTCTATCCGGCAACCTGAAAACGCTCTATGTCAGCGGCGAGGAATCGGCGCGCCAGGTCGCGCTGCGCGCACGTC
GCCTGAGCCTGCCCGAGACGACGTTCCCGGTGCTACCGGAAATCCGTCTCGAAGCCATCCTGGCGCAGCTTGCCGAATTG
AAGCCCGAAGTCGCGGTGATCGACTCGATCCAGACCGTGTATTCGGAGTCGCTGACCTCGGCCCCCGGCTCGGTGGCGCA
GGTGCGCGAATGCGCGGCGCAGCTCACGCGCCACGCCAAGCAGACCGGCACCGCGATCATCCTGGTCGGCCACGTCACCA
AGGAAGGCGCCATCGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACCGTGCTGTATTTCGAGGGCGACACCGGCTCG
AGCTTCCGGCTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAGATCGGCGTGTTCGCGATGACCGAGAAGGG
CCTCAAGGGCGTGTCCAACCCCTCGGCGATCTTCCTGTCGCGCCACGGCGAGCCGGTGCCCGGTTCGTGCGTGCTGGTCA
CGCAGGAAGGCACGCGGCCACTGCTGGTGGAAATCCAGGCGCTGGTCGATTCCAGCCACGCGCCGAGTCCGCGCCGATTG
AGCGTCGGCCTGGAGCAGAACCGCCTCGCCATGCTGCTCGCCGTGCTGCACCGCCACGCCGGCATCGCCTGCTTCGACCA
GGACGTGTTCGTCAACGCCGTCGGCGGGGTGAAGATCAGCGAACCCGCCGCCGACCTCGCCGTGCTCGCCGCCATCGTGT
CCTCGCTCCGCAGCCAGCCGCTGCCCGACAAGCTGGTGATGTTCGGCGAAGTTGGCCTCGCCGGAGAAATCCGCCCGGTA
CAGCGCGGCCAGGAGCGCCTGAAGGAAGCCGCCAAACTCGGCTTCACCCAGGCCATCGTGCCGGCCGCCAACCAGCCCAA
GCAGAAGATCGCCGGCATGACGGTGCATGCGGTGCAGCGGCTGGACGAGGCGATCCGTTTGTTCAGGGAAAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(340-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.214

100

0.514
  radA Streptococcus mitis SK321

46.56

96.674

0.45
  radA Streptococcus pneumoniae D39

46.453

96.896

0.45
  radA Streptococcus pneumoniae TIGR4

46.453

96.896

0.45
  radA Streptococcus pneumoniae R6

46.453

96.896

0.45
  radA Streptococcus pneumoniae Rx1

46.453

96.896

0.45
  radA Streptococcus mitis NCTC 12261

46.33

96.674

0.448