Detailed information NTG0468077

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6J83_RS21145
• Genome accession: NZ_CP069549
• Coordinates: 4440994..4441986 (+)
• Length: 330 a.a.
• NCBI ID: WP_097492330.1
• Uniprot ID: -
• Organism: Escherichia coli strain FDAARGOS_1253
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4435994..4446986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J83_RS21115 (I6J83_21115)	ispD	4436055..4436765 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6J83_RS21120 (I6J83_21120)	ispF	4436765..4437244 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6J83_RS21125 (I6J83_21125)	truD	4437241..4438290 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
I6J83_RS21130 (I6J83_21130)	surE	4438271..4439032 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6J83_RS21135 (I6J83_21135)	pcm	4439026..4439652 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
I6J83_RS21140 (I6J83_21140)	nlpD	4439837..4440931 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
I6J83_RS21145 (I6J83_21145)	rpoS	4440994..4441986 (+)	993	WP_097492330.1	RNA polymerase sigma factor RpoS	Regulator
I6J83_RS21150 (I6J83_21150)	-	4442157..4442708 (-)	552	WP_001179442.1	flavodoxin family protein	-
I6J83_RS21155 (I6J83_21155)	-	4442933..4443976 (+)	1044	WP_001161584.1	MBL fold metallo-hydrolase	-
I6J83_RS21160 (I6J83_21160)	ygbN	4444119..4445483 (-)	1365	WP_000104433.1	GntP family transporter	-
I6J83_RS21165 (I6J83_21165)	ygbM	4445572..4446348 (-)	777	WP_001136912.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37914.81 Da
• Isoelectric Point: 4.5916

>NTDB_id=468077 I6J83_RS21145 WP_097492330.1 4440994..4441986(+) (rpoS) [Escherichia coli strain FDAARGOS_1253]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFGPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=468077 I6J83_RS21145 WP_097492330.1 4440994..4441986(+) (rpoS) [Escherichia coli strain FDAARGOS_1253]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGGCCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712