Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HPSA_RS00100 | Genome accession | NC_017361 |
| Coordinates | 14146..14409 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584967.1 | Uniprot ID | E8QTD9 |
| Organism | Helicobacter pylori SouthAfrica7 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 9146..19409
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSA_RS00075 (HPSA_00050) | groES | 9425..9781 (-) | 357 | WP_000671961.1 | co-chaperone GroES | - |
| HPSA_RS00080 (HPSA_00055) | dnaG | 10072..11751 (+) | 1680 | WP_000601595.1 | DNA primase | - |
| HPSA_RS00085 (HPSA_00060) | - | 11748..12800 (+) | 1053 | WP_000721166.1 | MnmA/TRMU family protein | - |
| HPSA_RS00090 (HPSA_00065) | - | 12892..13719 (+) | 828 | WP_001154937.1 | DUF5718 family protein | - |
| HPSA_RS00095 (HPSA_00070) | comB2 | 13865..14146 (+) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| HPSA_RS00100 (HPSA_00075) | comB3 | 14146..14409 (+) | 264 | WP_000584967.1 | hypothetical protein | Machinery gene |
| HPSA_RS00105 (HPSA_00080) | comB4 | 14411..16774 (+) | 2364 | WP_000890256.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HPSA_RS00110 (HPSA_00085) | - | 17075..18415 (+) | 1341 | WP_014534700.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10020.11 Da Isoelectric Point: 9.5290
>NTDB_id=46804 HPSA_RS00100 WP_000584967.1 14146..14409(+) (comB3) [Helicobacter pylori SouthAfrica7]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSALEFFDEDIADIIIAKSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSALEFFDEDIADIIIAKSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=46804 HPSA_RS00100 WP_000584967.1 14146..14409(+) (comB3) [Helicobacter pylori SouthAfrica7]
ATGATTATCCTATCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGTGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGCGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATCGCTAAAAGCAAAATAAAGACT
AAAACCAAATGCTACAGAGCGTAG
ATGATTATCCTATCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGTGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGCGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATCGCTAAAAGCAAAATAAAGACT
AAAACCAAATGCTACAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
96.552 |
100 |
0.966 |