Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6J83_RS02435 Genome accession   NZ_CP069549
Coordinates   552427..553854 (-) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1253     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 547427..558854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J83_RS02400 (I6J83_02400) hisL 548011..548061 (-) 51 WP_001364200.1 his operon leader peptide -
  I6J83_RS02405 (I6J83_02405) yefM 548344..548595 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  I6J83_RS02410 (I6J83_02410) yoeB 548592..548846 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  I6J83_RS02415 (I6J83_02415) yeeZ 548929..549753 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  I6J83_RS02420 (I6J83_02420) yeeY 549799..550728 (+) 930 WP_000803346.1 LysR substrate-binding domain-containing protein -
  I6J83_RS02425 (I6J83_02425) yoeI 550943..551005 (+) 63 WP_010723108.1 membrane protein YoeI -
  I6J83_RS02430 (I6J83_02430) plaP 550995..552353 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6J83_RS02435 (I6J83_02435) sbcB 552427..553854 (-) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  I6J83_RS02440 (I6J83_02440) dacD 554063..555229 (+) 1167 WP_001580744.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6J83_RS02445 (I6J83_02445) sbmC 555348..555821 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  I6J83_RS02450 (I6J83_02450) yeeA 556019..557077 (+) 1059 WP_001200890.1 FUSC family protein -
  I6J83_RS02455 (I6J83_02455) tmaR 557249..557578 (+) 330 WP_000450409.1 DUF496 family protein -
  I6J83_RS02460 (I6J83_02460) - 557679..558122 (-) 444 WP_001189438.1 EutP/PduV family microcompartment system protein -
  I6J83_RS02465 (I6J83_02465) pduU 558127..558477 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=468007 I6J83_RS02435 WP_000980557.1 552427..553854(-) (sbcB) [Escherichia coli strain FDAARGOS_1253]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=468007 I6J83_RS02435 WP_000980557.1 552427..553854(-) (sbcB) [Escherichia coli strain FDAARGOS_1253]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAATGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583