Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6J78_RS10795 Genome accession   NZ_CP069542
Coordinates   2308273..2309700 (-) Length   475 a.a.
NCBI ID   WP_074400803.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1248     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2303273..2314700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J78_RS10765 (I6J78_10770) yeeZ 2303328..2304152 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  I6J78_RS10770 (I6J78_10775) yeeY 2304198..2305127 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  I6J78_RS10775 (I6J78_10780) yoeI 2305342..2305404 (+) 63 WP_010723108.1 membrane protein YoeI -
  I6J78_RS10780 (I6J78_10785) plaP 2305394..2306752 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6J78_RS10785 (I6J78_10790) tsuA 2306931..2307989 (+) 1059 WP_158137944.1 thiosulfate utilization transporter TsuA/YeeE -
  I6J78_RS10790 (I6J78_10795) tsuB 2308003..2308230 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I6J78_RS10795 (I6J78_10800) sbcB 2308273..2309700 (-) 1428 WP_074400803.1 exodeoxyribonuclease I Machinery gene
  I6J78_RS10800 (I6J78_10805) dacD 2309909..2311075 (+) 1167 WP_016247321.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6J78_RS10805 (I6J78_10810) sbmC 2311194..2311667 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  I6J78_RS10810 (I6J78_10815) yeeA 2311865..2312923 (+) 1059 WP_158137946.1 FUSC family protein -
  I6J78_RS10815 (I6J78_10820) tmaR 2313095..2313424 (+) 330 WP_000450409.1 DUF496 family protein -
  I6J78_RS10820 (I6J78_10825) - 2313525..2313707 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  I6J78_RS10825 (I6J78_10830) - 2313779..2313907 (+) 129 Protein_2123 transposase domain-containing protein -
  I6J78_RS10830 (I6J78_10835) - 2314196..2314276 (-) 81 Protein_2124 hypothetical protein -
  I6J78_RS10835 (I6J78_10840) yeeW 2314322..2314516 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54501.86 Da        Isoelectric Point: 5.6070

>NTDB_id=467968 I6J78_RS10795 WP_074400803.1 2308273..2309700(-) (sbcB) [Escherichia coli strain FDAARGOS_1248]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=467968 I6J78_RS10795 WP_074400803.1 2308273..2309700(-) (sbcB) [Escherichia coli strain FDAARGOS_1248]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATCTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCCGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAATGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581